Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1298
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    25   0.67 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    25   0.67 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.67 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.67 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.6  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 80  AFMHAGTTSDQFLRDNLEWLARATNWAKLTVTAS 181
           ++ H  TTS++F+R  +      T   +LT+TAS
Sbjct: 106 SYFHIATTSNEFIR--IHHSGSITRSIRLTITAS 137


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 80  AFMHAGTTSDQFLRDNLEWLARATNWAKLTVTAS 181
           ++ H  TTS++F+R  +      T   +LT+TAS
Sbjct: 106 SYFHIATTSNEFIR--IHHSGSITRSIRLTITAS 137


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 80  AFMHAGTTSDQFLRDNLEWLARATNWAKLTVTAS 181
           ++ H  TTS++F+R  +      T   +LT+TAS
Sbjct: 45  SYFHIATTSNEFIR--IHHSGSITRSIRLTITAS 76


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +1

Query: 604 CCWHCF 621
           CCWHCF
Sbjct: 605 CCWHCF 610


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 95  GTTSDQFLRDNLEWLARA--TNWAKLTVTASLGVIHRGHENESLALMQSYLP 244
           GT   +  R+ +E L+R+  T W++  +T +L  +  GH + + A +   LP
Sbjct: 551 GTLYGRCKREGIE-LSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLP 601


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,908
Number of Sequences: 438
Number of extensions: 3262
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)