Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1297
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    28   1.2  
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc...    25   6.4  

>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/77 (24%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = +3

Query: 150 IIFNVFAFIMDCHSISGYEQ*NVTIVS---HKSKFPNRVQATRTFYNKTYIRFLGLFQT- 317
           + +N+F  +   H+   Y++   TI     HK  F  +++    FY + + + + + +  
Sbjct: 265 LFYNIFG-VGASHAAEWYQKGWRTIEQVRKHKDSFTKQIKVGLEFY-EDFCKTVTIEEAT 322

Query: 318 -IYEYVISKFPSGIPIR 365
            IYE ++S+ P GI I+
Sbjct: 323 EIYETIVSRMPDGIKIQ 339


>SPBC19G7.06 |mbx1||MADS-box transcription factor
           Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 257 NSVWEFRFVTHNCYVSLLVSRN 192
           NSV+    V HN Y SL + RN
Sbjct: 413 NSVYRNNMVDHNLYPSLNIERN 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,357
Number of Sequences: 5004
Number of extensions: 44906
Number of successful extensions: 98
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)