Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1297
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0695 + 23610956-23611217,23611642-23611700                       27   8.7  
03_06_0332 + 33189255-33189314,33189450-33189485,33189580-331896...    27   8.7  

>06_03_0695 + 23610956-23611217,23611642-23611700
          Length = 106

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = -1

Query: 278 VERPRGLNSVWEFRFVTHNC--YVSLLVSRNTMAIHYKCKNIKNNLHALMIKFTFFY*TH 105
           ++ P GL ++ + +F T     ++  + S+++     K + +KNNL+ LM ++       
Sbjct: 16  IQGPMGLATILDPKFKTDYLLGFIESITSQSSEECTDKLEEVKNNLYDLMKEYEMEEDED 75

Query: 104 KLRQSAHKNA 75
               SAH  A
Sbjct: 76  NTESSAHSLA 85


>03_06_0332 +
           33189255-33189314,33189450-33189485,33189580-33189648,
           33190526-33190594,33190695-33190757,33190846-33190944,
           33191020-33191087,33191168-33191480
          Length = 258

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 188 MAIHYKCKNIKNNLHALMIKF 126
           +A+HYK K ++ NL   MIKF
Sbjct: 171 LALHYKMKKMETNLKQDMIKF 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,512,422
Number of Sequences: 37544
Number of extensions: 241170
Number of successful extensions: 468
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)