Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1297
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical pr...    28   5.9  
X89080-1|CAA61451.1|  113|Caenorhabditis elegans dad-1 protein.        27   7.7  
AF039713-4|AAB96727.1|  113|Caenorhabditis elegans Dad (defender...    27   7.7  

>Z99279-3|CAB16495.1|  298|Caenorhabditis elegans Hypothetical
           protein Y57G11A.3 protein.
          Length = 298

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 442 ICYRVAYIINNVLRIIPIFHIQCF 513
           IC +V Y +  VL    ++HIQCF
Sbjct: 194 ICDKVVYPVEKVLANKNLYHIQCF 217


>X89080-1|CAA61451.1|  113|Caenorhabditis elegans dad-1 protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 285 TYIRFLGLFQTIYEYVISKFP 347
           TYI F G+FQ IY  ++  FP
Sbjct: 32  TYILFTGIFQFIYCLLVGTFP 52


>AF039713-4|AAB96727.1|  113|Caenorhabditis elegans Dad (defender
           against apoptoticdeath) homolog protein 1 protein.
          Length = 113

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 285 TYIRFLGLFQTIYEYVISKFP 347
           TYI F G+FQ IY  ++  FP
Sbjct: 32  TYILFTGIFQFIYCLLVGTFP 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,665,500
Number of Sequences: 27780
Number of extensions: 248538
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)