Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1294
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo...    26   5.2  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   6.9  
SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating ...    25   9.2  

>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
           Pik3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 801

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 697 FFGLPLPLHPSIIIVNIL 644
           F  LPLPL PS+ IV I+
Sbjct: 498 FHALPLPLDPSVNIVGII 515


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 774 ILSIIYHFFAHS-PSYPYRLSRNPSISSSVYL-FLYIL 667
           I  ++Y  F  S P+ P+RL R P+I +   + FL+ +
Sbjct: 343 IAFVLYEIFVASFPALPFRLMREPTIGACCAMSFLFYI 380


>SPBC19F8.07 |crk1|mop1, mcs6|cyclin-dependent kinase activating
           kinase Crk1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 703 HFFFGLPLPLHPSII 659
           H+F  LP P HPS++
Sbjct: 290 HYFSALPKPTHPSLL 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,559
Number of Sequences: 5004
Number of extensions: 59333
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)