Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1293
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   3.1  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    25   9.4  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   9.4  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   9.4  

>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 417 LRIKPLQYMLNSNNKYF*SENFFRIVVISNR 325
           +R +P  Y+LN+N KY  +       VI NR
Sbjct: 224 IRDRPFYYLLNANGKYAGNSKDVLFCVIGNR 254


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 23/77 (29%), Positives = 33/77 (42%)
 Frame = +2

Query: 188 IHTLVLKNLTDGAVLNSMYISVSFFAGFILHIFVFVSLTCRFFRCIRFEITTILKKFSLQ 367
           + T  L+      V N + ++ S F   +L  F F+   C FFR   F        FSL 
Sbjct: 100 MQTFRLRPFAKNGVTNGVKLAQSLF---LLLPFNFIFFACLFFRKASF------TDFSLM 150

Query: 368 KYLLLEFSIYCRGLILS 418
            ++L  F I+C    LS
Sbjct: 151 GWIL--FGIWCLTCFLS 165


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 330 NRMQRKKRQVRDTNTKMCRMKPAKNETEI 244
           + ++RKK Q  +   K  R KP KN+ +I
Sbjct: 4   SELKRKKHQSGNEEVKEKRQKPLKNDKKI 32


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 306 QVRDTNTKM--CRMKPAKNETEIYILFN 229
           Q+R TN K+  C++   K+E E Y LF+
Sbjct: 98  QLRLTNMKLWNCKLPSLKDEAEFYSLFS 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,493
Number of Sequences: 5004
Number of extensions: 52306
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)