Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1293
         (789 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    29   4.2  
02_04_0658 - 24793219-24794109                                         28   9.7  

>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
            7316430-7316625,7316727-7316953,7317177-7318134,
            7320104-7321307,7321517-7321876,7321965-7323195,
            7323334-7323599,7323738-7326335
          Length = 2453

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 320  CIRFEITTILKKFSLQKYLLLEFSIYCRGLILSGSRFRS 436
            C  ++  ++  K  L   + +E S +CR +ILSG  F S
Sbjct: 1896 CQGWDAISMYVKIGLGDEIPMEISYFCRSMILSGCAFES 1934


>02_04_0658 - 24793219-24794109
          Length = 296

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = +2

Query: 212 LTDGAVLNSMYISVSFFAGFI---LHIFVFVSLTCRFFRCIRFEITTILKKFSLQKYLLL 382
           LT    LN+  ++    A  +   LH+F  +  + + F  +   +   +KKFSL+ +LL 
Sbjct: 175 LTSNISLNASIVASVLVASRLPSRLHVFAIMLFSLQIFLFVPL-VAFCIKKFSLRLHLLF 233

Query: 383 EFSI 394
            F++
Sbjct: 234 SFAL 237


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,386,984
Number of Sequences: 37544
Number of extensions: 279780
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)