Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1293
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine r...    30   1.6  
Z74043-8|CAA98538.1|  368|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>AF067613-11|AAN73862.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein19 protein.
          Length = 334

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = +2

Query: 155 NPKLKFTTRAFIHTLVLKNLTDGAVLNSMYISVSFFAGFI-LHIFVF-VSLTCRFFRCIR 328
           NP+ ++     I  L++K +T   VLN + + + +F   + L  F+  V +   +  C +
Sbjct: 235 NPQ-RYILWQLISVLIIKLITFPFVLNGL-VRIDYFVVTVPLDCFLLPVLVQISYLGCNK 292

Query: 329 FEITTILKKFSLQKYL 376
             +TT+L  F L+K+L
Sbjct: 293 RNVTTLLGSFRLKKFL 308


>Z74043-8|CAA98538.1|  368|Caenorhabditis elegans Hypothetical
           protein T19B10.6 protein.
          Length = 368

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 175 YKSFHTHVSIKKSHRWRC 228
           Y SFH  V + K H WRC
Sbjct: 130 YHSFHDEVRLYKQHWWRC 147


>Z83216-2|CAB05673.1|  315|Caenorhabditis elegans Hypothetical
           protein C08F11.2 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 22/96 (22%), Positives = 39/96 (40%)
 Frame = -1

Query: 354 FFRIVVISNRMQRKKRQVRDTNTKMCRMKPAKNETEIYILFNTAPSVRFFNTNVCMKALV 175
           FF ++++ NR  RKK  +RD   K        N   I ++F     + F   N+  K + 
Sbjct: 36  FFVLLIVYNR--RKKLDLRDQGFKELHAPIFINFFFISLVFVILQDLSFIIRNIGFKKIE 93

Query: 174 VNFNLGLYVKLKYQFTEGATLQFLLMTKFYIYLRRL 67
               L L +     F    +   ++  +F   ++RL
Sbjct: 94  YEIFLTLLINGVISFFSSMSFSCMISLQFLSVIQRL 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,040,720
Number of Sequences: 27780
Number of extensions: 282567
Number of successful extensions: 742
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 742
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)