Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1293
         (789 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   3.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   4.3  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   9.9  

>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 692 HSLGKSYSRSWLL 730
           H  GK++SR WLL
Sbjct: 46  HLCGKAFSRPWLL 58


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 249 LSHSLLASSYTFLYLCLLPVVFSVASGLKSQ 341
           LS + LASS  F  LC+L +  ++ + ++++
Sbjct: 22  LSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 249 LSHSLLASSYTFLYLCLLPVVFSVASGLKSQ 341
           LS + LASS  F  LC+L +  ++ + ++++
Sbjct: 22  LSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 249 LSHSLLASSYTFLYLCLLPVVFSVASGLKSQ 341
           LS + LASS  F  LC+L +  ++ + ++++
Sbjct: 22  LSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 249 LSHSLLASSYTFLYLCLLPVVFSVASGLKSQ 341
           LS + LASS  F  LC+L +  ++ + ++++
Sbjct: 22  LSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 741 LVFMSNHDLEYDFP 700
           LVF+ NHD + D P
Sbjct: 302 LVFVDNHDTQRDNP 315


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 484 TLAPTLARVVLRRITTGSE 428
           TL P LAR   ++ TTG E
Sbjct: 339 TLTPKLARKQFQKNTTGLE 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,958
Number of Sequences: 438
Number of extensions: 3451
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)