Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1292
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c... 28 1.7
SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr 2|... 28 1.7
SPAC1F12.02c |p23fy||translationally controlled tumor protein ho... 27 3.9
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 3.9
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 27 3.9
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 5.2
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 26 6.8
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 6.8
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 25 9.0
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 9.0
>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 571
Score = 27.9 bits (59), Expect = 1.7
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = +1
Query: 415 LQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDPRDVAVSL 594
+ R ++ F+ T +P P YV+ H P S P +LD ++ P V
Sbjct: 104 IDEARAKEDPNFQIHSTPSRMP-PHYVQPHPPFSVFPAPILDVREL----TKPGAVKRVF 158
Query: 595 HFAVKLFGY 621
HF + + Y
Sbjct: 159 HFELDVSNY 167
>SPBC106.02c |srx1||sulfiredoxin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 154 AGCTLCSISSELNPLPPSQV*FHVENGSPYFFS 56
A C L S E LPP V ++G PY+F+
Sbjct: 47 ASCGLTSEDLEAGELPPVDVLTFKKSGKPYYFA 79
>SPAC1F12.02c |p23fy||translationally controlled tumor protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 168
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 316 NNLDYVAAASQPLSKRYAYIEYVTQKSDAAKKMLQSIRPEQRATFE 453
NNL Y S + +Y+ Y+ A K LQ PE+ FE
Sbjct: 66 NNLVYSFRLSPTSFDKKSYMSYIKGYMKAIKARLQESNPERVPVFE 111
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 460 ETLPNLPSPRYVKSHLPLSRLPPALLDT 543
ET+P+ P P S LP+ PPA L+T
Sbjct: 197 ETVPSTPQPA---SSLPIPSSPPAALET 221
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 133 YYKGYSRPFVRVGAPGYLATPGYQDHAED 219
YY Y P GA GYL +P + ED
Sbjct: 383 YYLQYLTPLRESGAIGYLGSPAISNVGED 411
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.2 bits (55), Expect = 5.2
Identities = 7/27 (25%), Positives = 18/27 (66%)
Frame = +1
Query: 640 FKEFWDLFKRDLVLHTPIFSHVKEAWE 720
F+ FW ++ + LV+ +F+H+ + ++
Sbjct: 43 FRRFWTIWLKSLVIMVLLFTHIYDCYK 69
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 25.8 bits (54), Expect = 6.8
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 226 NLEIRPDDIWVIPFSRSGTTWLQELVWLVNNNLDYVAAASQPLSKRYAYIEYVTQKSDAA 405
N I+ D I + S L + V L+ N +D +A PLS + +K+D
Sbjct: 1066 NQSIQSDQIKEVGEVLSAIKSLSDSVMLLKNQIDDLAKEKLPLSSSDDEKVNIKEKTDFM 1125
Query: 406 KKMLQS 423
K +++S
Sbjct: 1126 KLLVKS 1131
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 25.8 bits (54), Expect = 6.8
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +1
Query: 310 VNNNLDYVAAASQPLSKRYAYIEYVTQKSDAAKKMLQSIRPEQRATFESFETLPNLPSPR 489
VN+ L Y A S P +R EY+ + +LQS + F P + SP
Sbjct: 385 VNSLLSYNANPSIPNRQRRTASEYLLEADKKPHSLLQSNSNASHSAFSFSGISPAIISPS 444
Query: 490 YVKSHLPLSRLP 525
SH + +P
Sbjct: 445 -CSSHAFVKAIP 455
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = +1
Query: 178 GYLATPGYQDHAEDIYNLEIRPDDI-WVIPFSRSGTTWLQELVWLVNNNLDYVAA 339
G ++T GY D N W L + WLVN+N+ YV A
Sbjct: 436 GIISTAGYSSPLADYGNTYYNDHHFHWGYHIYACAVIGLLDPSWLVNDNIRYVNA 490
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 391 KSDAAKKMLQSIRPEQRATFESFETLP 471
K+DA ++MLQSIR + + E+ + LP
Sbjct: 3 KTDACERMLQSIRSHKNSKLEN-QRLP 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,957
Number of Sequences: 5004
Number of extensions: 68445
Number of successful extensions: 205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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