Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1292
(769 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132858-6|CAB60475.1| 412|Caenorhabditis elegans Hypothetical ... 38 0.008
Z81484-1|CAB03967.1| 314|Caenorhabditis elegans Hypothetical pr... 29 3.6
U41263-10|AAO38593.1| 610|Caenorhabditis elegans Hypothetical p... 28 6.4
AF025471-10|AAB71059.1| 326|Caenorhabditis elegans Hypothetical... 28 6.4
AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical ... 28 6.4
U29097-10|AAA68414.1| 348|Caenorhabditis elegans Serpentine rec... 28 8.4
AF357878-1|AAK27716.1| 589|Caenorhabditis elegans receptor-medi... 28 8.4
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 28 8.4
AF357876-1|AAK27714.1| 576|Caenorhabditis elegans receptor-medi... 28 8.4
AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor med... 28 8.4
AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor med... 28 8.4
AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor med... 28 8.4
AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor med... 28 8.4
AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor med... 28 8.4
AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor med... 28 8.4
>AL132858-6|CAB60475.1| 412|Caenorhabditis elegans Hypothetical
protein Y113G7A.11 protein.
Length = 412
Score = 37.9 bits (84), Expect = 0.008
Identities = 43/181 (23%), Positives = 68/181 (37%), Gaps = 1/181 (0%)
Frame = +1
Query: 226 NLEIRPDDIWVIPFSRSGTTWLQELVWLVNNNLDYVAAASQPLSKRYAYIEYVTQKSDAA 405
+++ D+ + + + GTTWLQ + + DY A L + IE
Sbjct: 81 SMQFGETDVVIATYPKCGTTWLQHITSQLIKGHDYKAGKGNELCVQSPMIE--------- 131
Query: 406 KKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDPRDVA 585
A F N+ PR +K+H +P DT K Y R+P+D
Sbjct: 132 ---------RMGAAFAD-----NIKGPRVLKTHFHHYNIPK-YPDT-KYIYCVRNPKDCL 175
Query: 586 VSLHFAVKLFGYFS-DEVTFKEFWDLFKRDLVLHTPIFSHVKEAWEKRHNPNLFFLFYED 762
S + F ++ T+ F DLF + F H+ + N+ FL YED
Sbjct: 176 TSYFHHNRNFKIYNWANGTWDVFLDLFASGQLAFGDYFEHLLSWLPCLKDDNVLFLKYED 235
Query: 763 L 765
+
Sbjct: 236 M 236
>Z81484-1|CAB03967.1| 314|Caenorhabditis elegans Hypothetical
protein C47A10.2 protein.
Length = 314
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 117 ILFLRHRFNFMWKTDRHIFFLLNYLYLIRH 28
++F +H + W+ R+ FFLLNY+Y + +
Sbjct: 119 LIFAKHTW---WRFGRYPFFLLNYIYALTY 145
>U41263-10|AAO38593.1| 610|Caenorhabditis elegans Hypothetical
protein T19D12.2a protein.
Length = 610
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 211 AEDIYNLEIRPDDIWVIPFSRSGTTWLQELVWLVNN 318
A+ + +L+ D +++ FS T LVWL+NN
Sbjct: 491 AKSLIDLQSNVDTLYINAFSMRDATISDGLVWLINN 526
>AF025471-10|AAB71059.1| 326|Caenorhabditis elegans Hypothetical
protein R52.1 protein.
Length = 326
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 257 SSLSLDLGQHGFKN*YGWSIITWITWPQLLNPSVKDTLIL 376
S +S ++ +H F+ GW +I+W L N + D I+
Sbjct: 81 SKVSSEIFKHKFEKNEGWGYFKFISWDTLTNDYLIDDCII 120
>AF016675-5|AAB66134.1| 476|Caenorhabditis elegans Hypothetical
protein T27B7.2 protein.
Length = 476
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -2
Query: 657 VPEFFESDLVREIAEELNSEM*RHGHVSRVAGYVEYLCSIQQSWWQTR 514
V + F+ L ++ SE+ R ++ R+ +++ IQ+S W+TR
Sbjct: 351 VTDHFQQTLSNDLHHYYTSELNRERYLKRLTDFMKINKLIQKSIWETR 398
>U29097-10|AAA68414.1| 348|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 29 protein.
Length = 348
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 499 SHLPLSRLPPALLDTAKVFYIARDPRDVAVSLHFAVKLFGYFSDE 633
S++P+ PPA + FY D R + + F LF Y ++
Sbjct: 172 SYVPMCNYPPASSVSGTKFYFINDSRIIIMGTIFMCSLFLYIHNK 216
>AF357878-1|AAK27716.1| 589|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform I protein.
Length = 589
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 394 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 573
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 477 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 534
Query: 574 RD 579
+D
Sbjct: 535 KD 536
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 394 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 573
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 723 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 780
Query: 574 RD 579
+D
Sbjct: 781 KD 782
>AF357876-1|AAK27714.1| 576|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform IV protein.
Length = 576
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 394 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 573
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 464 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 521
Query: 574 RD 579
+D
Sbjct: 522 KD 523
>AC006695-15|AAO25981.1| 555|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform f protein.
Length = 555
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 394 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 573
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 443 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 500
Query: 574 RD 579
+D
Sbjct: 501 KD 502
>AC006695-14|AAK73902.2| 576|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform d protein.
Length = 576
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 394 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 573
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 464 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 521
Query: 574 RD 579
+D
Sbjct: 522 KD 523
>AC006695-13|AAF39978.1| 786|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform a protein.
Length = 786
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 394 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 573
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 674 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 731
Query: 574 RD 579
+D
Sbjct: 732 KD 733
>AC006695-12|AAL65796.1| 613|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform e protein.
Length = 613
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 394 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 573
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 501 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 558
Query: 574 RD 579
+D
Sbjct: 559 KD 560
>AC006695-11|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 394 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 573
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 723 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 780
Query: 574 RD 579
+D
Sbjct: 781 KD 782
>AC006695-10|AAF39980.1| 589|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform c protein.
Length = 589
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 394 SDAAKKMLQSIRPEQRATFESFETLPNLPSPRYVKSHLPLSRLPPALLDTAKVFYIARDP 573
+D A+ ++ R +TFES + S R K H+ S+LP ++L KV+ +A
Sbjct: 477 ADEAEWVVSRERTTADSTFESLGPVNGYLSGRAAKEHMVKSKLPNSVL--GKVWKLADID 534
Query: 574 RD 579
+D
Sbjct: 535 KD 536
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,461,143
Number of Sequences: 27780
Number of extensions: 383022
Number of successful extensions: 1096
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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