Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1292
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    26   0.34 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   4.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.2  

>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 413 CCNQSDLSRELRLRASKLCQIYRHRDMLKVTYRCRVCHQLCWILQRYS 556
           C N+S L+  L+  ++    +Y++R     TY  + CH L   L++YS
Sbjct: 26  CVNKSMLNSHLKSHSN----VYQYR-CANCTYATKYCHSLKLHLRKYS 68


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 96  TCDGGRGFNSEEILQRVQPAVCPR 167
           +C+G +GF    I Q++Q   C +
Sbjct: 83  SCEGCKGFFRRSIQQKIQYRPCTK 106


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +1

Query: 199 YQDHAEDIYNLEIRPDDIWVIPFSRSGTTWLQELVWLVNNNLDYVAAASQPLSK 360
           YQ  + D      + DD     FS S  TWL+     VN N   V  A++   K
Sbjct: 408 YQTMSRDPARTPFQWDDSVSAGFSSSSNTWLR-----VNENYKTVNLAAEKKDK 456


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 301 VWLVNNNLDYVAAASQPL 354
           +WL+ + LD+   AS PL
Sbjct: 679 IWLLGSRLDWEDHASSPL 696


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +1

Query: 199 YQDHAEDIYNLEIRPDDIWVIPFSRSGTTWLQELVWLVNNNLDYVAAASQPLSK 360
           YQ  + D      + DD     FS S  TWL+     VN N   V  A++   K
Sbjct: 408 YQTMSRDPARTPFQWDDSVSAGFSSSSNTWLR-----VNENYKTVNLAAEKKDK 456


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 242 GLISRLYISSAWSWYPGVARYPGA 171
           G ++ LY+ S   W P +  Y  A
Sbjct: 90  GGVTELYVPSEHIWLPDIVLYNNA 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,769
Number of Sequences: 438
Number of extensions: 4827
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)