Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1290
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    27   4.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    26   5.2  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    26   5.2  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   9.2  

>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 278 FTMVSRGIASVGPNSAPVVDSAQHYSFHFGACLKHRSSFSS 156
           F+ V R      PNS  + D   HY +HF   + H  S  S
Sbjct: 64  FSSVVRNALKANPNSVSIRDITTHY-YHFAEKMLHLISDDS 103


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -2

Query: 723  PIPAGRLRLEKGARGTARRQPPRATPQNRLPT--KPHRAPPL 604
            PIP     + K + G     PP   P + +P+   P  APP+
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 717 PAGRLRLEKGARGTARRQPPRATPQ-NRLPTKPHRAPPLRLHETHGTAQCAP 565
           P+  +RL + +    + QPP   PQ N  P     APP++  +T    Q AP
Sbjct: 190 PSNYVRLLEDS--AVKAQPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAP 239


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 663 PPRATPQNRLPTKPHRAPPLRLHETHGTAQ 574
           PP+ T   RL T  H  PP+    T  T Q
Sbjct: 10  PPKRTINTRLSTPVHIPPPINSESTRITPQ 39


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = -2

Query: 777 APPEKNREKKKTGVLLFSPIPAGRL-RLE--KGARGTARRQPPRATPQNRLPTKPHRAPP 607
           A  E+NR          + +P+  L RLE  K AR  + + P R   Q+     PH +P 
Sbjct: 412 AKKERNRSNSTNDDYSSTRLPSSVLHRLEALKEARKLSEQLPNRIFAQD-----PHPSPR 466

Query: 606 LRLHETH 586
           L+  ETH
Sbjct: 467 LKKEETH 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,938
Number of Sequences: 5004
Number of extensions: 61113
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)