Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1290
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0750 - 21226896-21227011,21227116-21227370,21227469-212287... 31 1.3
01_05_0772 + 25056973-25057285,25057678-25058006,25058113-250583... 29 3.1
08_02_0133 - 12997143-12997331,12997420-12997510,12997934-12998232 29 4.1
05_01_0442 - 3500849-3500866,3500950-3501027,3501260-3501352,350... 29 4.1
03_05_0547 + 25432079-25432356,25432446-25432522,25432685-254328... 29 4.1
08_02_0516 + 18080706-18080760,18081796-18081885,18082479-180825... 29 5.4
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929... 29 5.4
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 28 7.2
04_03_0902 + 20707834-20708187 28 7.2
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206... 28 7.2
09_03_0068 + 12047193-12047548,12048302-12048428 28 9.5
08_02_1012 + 23550314-23551504 28 9.5
>07_03_0750 -
21226896-21227011,21227116-21227370,21227469-21228785,
21228918-21228984
Length = 584
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 269 VSRGIASVGPNSAPVVDSAQHYSFH 195
+SR A GPN++PVVD A ++H
Sbjct: 215 ISRDYAVFGPNASPVVDQASGITYH 239
>01_05_0772 +
25056973-25057285,25057678-25058006,25058113-25058360,
25058481-25059396
Length = 601
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/69 (30%), Positives = 33/69 (47%)
Frame = -2
Query: 714 AGRLRLEKGARGTARRQPPRATPQNRLPTKPHRAPPLRLHETHGTAQCAPKVQIFMKTVI 535
AG L+ +G RGTA R P P+N +K RA P + H P+V ++ ++
Sbjct: 48 AGALQ-GQGLRGTAYRFPAGDLPENARRSKEARAKP--MPPCH---DIVPRVAPLLQDIV 101
Query: 534 EHYVKICEF 508
+ YV +
Sbjct: 102 KEYVNTSSY 110
>08_02_0133 - 12997143-12997331,12997420-12997510,12997934-12998232
Length = 192
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Frame = -2
Query: 726 SPIPAGRLRLEKGARGTARRQPPRATPQNRLPTKPHRAPPL--RLHETHGTAQCAPKVQI 553
+P + R L GA PP P ++LP P PPL R E P VQ+
Sbjct: 32 APALSRRRSLLSGAHTADEPPPPTQPPPSKLPDAPGAVPPLPWRAAEAEIVRDIDPVVQL 91
>05_01_0442 -
3500849-3500866,3500950-3501027,3501260-3501352,
3501419-3501536,3502815-3502945,3503027-3503299,
3504825-3504882,3505065-3505388,3507404-3507852,
3509514-3509554,3510263-3510412,3510519-3510906
Length = 706
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 693 KGARG-TARRQPPRATPQNRLPTKPHRAPPL 604
KGA+G AR PP P+ RLP P P+
Sbjct: 83 KGAKGKAARADPPTPPPRPRLPPFPKSGDPM 113
>03_05_0547 +
25432079-25432356,25432446-25432522,25432685-25432819,
25433516-25433570,25433696-25433783,25435040-25435138,
25435227-25435358
Length = 287
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/49 (36%), Positives = 20/49 (40%)
Frame = -2
Query: 711 GRLRLEKGARGTARRQPPRATPQNRLPTKPHRAPPLRLHETHGTAQCAP 565
GRL A +AR PPRA +R PP L T A AP
Sbjct: 25 GRLLASPAAWRSARTLPPRAVASSRATVLVSNPPPPPLPPTPAPAAVAP 73
>08_02_0516 +
18080706-18080760,18081796-18081885,18082479-18082573,
18083658-18083726,18083812-18084393
Length = 296
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 663 PPRATPQNRLPTKPHRAPPLRLH-ETHGTAQCAPKVQ 556
P + PQ++LP +P + P L+L + H Q P++Q
Sbjct: 230 PQQLQPQSQLPPQPQQPPQLQLQSQLHPQPQQPPQLQ 266
>01_01_1166 +
9287840-9288040,9289752-9289799,9292166-9292282,
9293018-9293700,9295214-9297190,9298330-9298441,
9299848-9299904
Length = 1064
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -2
Query: 708 RLRLEKGARGTARRQPPRATPQNRL-PTKPHRAPPLRLHETHGTAQCAPKVQIFMKTVIE 532
+LR +K +++RQ P T ++RL P +PHR LRL E + C + +MK V E
Sbjct: 76 KLRHDKLMIESSKRQFP--TRRSRLSPARPHRRSRLRLREPSRSC-CWTMTRTWMKQVRE 132
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 723 PIPAGRLRLEKGARGTARRQPPRATPQNRLPTKPHRAPPLRLHETHGTAQ 574
P+PA RL + R P R +P + P +PHR R H T +++
Sbjct: 17 PLPARRLPRRNPSLPFPLRPPHRLSPFSAPPPEPHRL-TYRTHSTSSSSR 65
>04_03_0902 + 20707834-20708187
Length = 117
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 705 LRLEKGARGTARRQPPRATPQNRLPTKPHRAPPLRLHET 589
L + + A +PP+ T ++RLP+ P + PP R T
Sbjct: 19 LETQAKTKPKAEEKPPK-TKEHRLPSHPDKPPPYRNSHT 56
>01_02_0111 -
11220179-11220322,11220430-11220497,11220611-11220644,
11220735-11220766,11220900-11220959,11221276-11221729
Length = 263
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 660 PRATPQNRLPTKPHRAPPLRLHETHGTAQCAPKVQ 556
PR P +RL P PP L TH A+ +V+
Sbjct: 55 PRQPPPSRLHRSPPHPPPPPLRRTHVAARLVERVR 89
>09_03_0068 + 12047193-12047548,12048302-12048428
Length = 160
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -2
Query: 720 IPAGRLRLEKGARGTARRQPP--RATPQNRLPTKPHRAP 610
+ AG+LR G G + R PP R+ P K HR P
Sbjct: 51 VSAGKLRGGGGGDGNSARSPPAGRSDMSGDSPRKSHRKP 89
>08_02_1012 + 23550314-23551504
Length = 396
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = -2
Query: 732 LFSPIPAGRL--RLEKGARGTARRQPPRATPQNRLPTKPHRAP 610
LF P+ L L+ A A R PP +PQ + P R+P
Sbjct: 128 LFDPVRKASLDSSLDAAAAAAAPRPPPAPSPQKQQPQPQPRSP 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,522,319
Number of Sequences: 37544
Number of extensions: 425064
Number of successful extensions: 1378
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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