Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1289
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    33   0.30 
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    33   0.30 
Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical pr...    31   0.92 
U41549-3|AAA83283.2|  245|Caenorhabditis elegans Hypothetical pr...    31   1.2  
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr...    28   6.5  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical ...    28   6.5  
AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome as...    28   6.5  
AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog...    28   6.5  
AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.       28   6.5  
Z69383-2|CAA93408.2|  318|Caenorhabditis elegans Hypothetical pr...    28   8.6  
AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm rec...    28   8.6  

>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 37   SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 213
            +E   S EDK   + +I   +E ++  LE+   +    R D++KA +++  D KVA    
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079

Query: 214  DEVAQ 228
            DE+ +
Sbjct: 1080 DEITK 1084


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 37   SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 213
            +E   S EDK   + +I   +E ++  LE+   +    R D++KA +++  D KVA    
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079

Query: 214  DEVAQ 228
            DE+ +
Sbjct: 1080 DEITK 1084


>Z74029-2|CAA98432.1|  334|Caenorhabditis elegans Hypothetical
           protein C45B11.4 protein.
          Length = 334

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 771 WHIYFWFMFTLFMHLFFYWNMTFFYFCDCTIYSFIKVS 658
           WH Y W MFT  + +  +  + FF+ C C  Y +   +
Sbjct: 208 WHTYLW-MFTTIIVIGIFIQVAFFFLC-CLYYIYFSTT 243


>U41549-3|AAA83283.2|  245|Caenorhabditis elegans Hypothetical
           protein F22F1.3 protein.
          Length = 245

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +2

Query: 20  QLLMQNLKSRPLRRIRIHQFDKL 88
           +LL  N KSR  RRIRIH  DKL
Sbjct: 127 RLLKPNAKSRITRRIRIHVIDKL 149


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +1

Query: 541 LQITRAAEHLYSIIDGKPKEVLGTTYLRIKEIVSTVHEC 657
           L   +   + + +IDG+P +++ +T +++K+    V +C
Sbjct: 14  LAAQKGPSYKFGVIDGEPIDLINSTSVQVKDFDECVEKC 52


>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +1

Query: 28  NAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 207
           NAK +     E+K T I++    ++   + ++  K +L   +   ++ +EL S QK    
Sbjct: 367 NAKEDLKVVEEEKHTGIQRAQGALDDAEKEVKVLKEQLERAQSALESSQELASSQK--AD 424

Query: 208 KYDEVAQTLEFARDLSKQ 261
           K  E+ + L+ A+  S +
Sbjct: 425 KIQELEKELQNAQKRSSE 442


>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/78 (24%), Positives = 38/78 (48%)
 Frame = +1

Query: 28  NAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 207
           NAK +     E+K T I++    ++   + ++  K +L   +   ++ +EL S QK    
Sbjct: 367 NAKEDLKVVEEEKHTGIQRAQGALDDAEKEVKVLKEQLERAQSALESSQELASSQK--AD 424

Query: 208 KYDEVAQTLEFARDLSKQ 261
           K  E+ + L+ A+  S +
Sbjct: 425 KIQELEKELQNAQKRSSE 442


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +1

Query: 19  SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGK 174
           S+    S  PAS+ D DT +R+I   +E  +++ ++  + +  +R   + G+
Sbjct: 9   SSRAMSSASPASASDSDTSVRKIGKALETYLKHSQQHVAMMEKHRAEFETGR 60


>AL132848-5|CAB60389.2|  702|Caenorhabditis elegans Hypothetical
           protein Y47H10A.1 protein.
          Length = 702

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 460 DLKILDDLYPEVTPKHELNEEGQSG-FHLQITRAAEHLYSIIDGKPKEVLGT 612
           +L + D+L+  V P  +   E  +G FH Q  R  E +  +ID +   V GT
Sbjct: 278 NLSLRDELFYRVVPPDQSFTEKYAGIFHFQFWRYGEWVDVVIDDRLPTVNGT 329


>AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome
           assembly factor protein6 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
 Frame = -1

Query: 479 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 327
           S+ ++++S+V+ + PF  F+ K+ L S++   +         Q  ISK + +LLV+ A  
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268

Query: 326 TQASFLACFFASRSEEIAIAVTCFERSLANS 234
           +    ++  FAS +      V  +E    N+
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCENA 299


>AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog
           protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
 Frame = -1

Query: 479 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 327
           S+ ++++S+V+ + PF  F+ K+ L S++   +         Q  ISK + +LLV+ A  
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268

Query: 326 TQASFLACFFASRSEEIAIAVTCFERSLANS 234
           +    ++  FAS +      V  +E    N+
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCENA 299


>AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.
          Length = 720

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
 Frame = -1

Query: 479 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 327
           S+ ++++S+V+ + PF  F+ K+ L S++   +         Q  ISK + +LLV+ A  
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268

Query: 326 TQASFLACFFASRSEEIAIAVTCFERSLANS 234
           +    ++  FAS +      V  +E    N+
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCENA 299


>Z69383-2|CAA93408.2|  318|Caenorhabditis elegans Hypothetical
           protein F13E9.5 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 460 DLKILDDLYPEVTPKHELNEEGQSGFHLQITRAAEHLYSIIDGKPK 597
           +LK  DD +P+   K E N E     H  +T   +  ++   GKP+
Sbjct: 38  NLKKFDDAFPKPNKKKEANMEFGELMHKYLTMRPDGRFATWHGKPQ 83


>AF068709-10|AAC19252.2|  345|Caenorhabditis elegans Seven tm
           receptor protein 33 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 777 TNWHIYFWFMFTLFMHLFFYWNMTFFYFCDCTIYSFIK 664
           T W + FW  + +F    +  ++ F  F D   Y++I+
Sbjct: 130 TGWKLVFWVFYVIFFGFAWSASVYFCLFPDTYSYNYIR 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.132    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,005,006
Number of Sequences: 27780
Number of extensions: 285647
Number of successful extensions: 895
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)