Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1288
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    27   1.6  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.6  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.6  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    25   3.7  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    25   4.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   6.4  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +1

Query: 7   DVRCILCSDCTDVRIPQASTNFSNEIRTQQRFTIDL 114
           D R I C+DC  VR P  S   S+E      F +D+
Sbjct: 119 DNRTIFCNDCKQVRHPSRS---SDESADYHNFEVDV 151


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 388 AHSPPGVKWLLEPIDIYNVDAPPTLR 311
           A  PP +K    P+DI N+DA   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 397 GGRAHSPPGVKWLLEPIDIYN 335
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = +1

Query: 28   SDCTDVR----IPQASTNFSNEIRTQQRF 102
            SDC  V     IP+A+ +F+N+I TQ  F
Sbjct: 1295 SDCFSVATSSDIPKANIDFTNDISTQNTF 1323


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 64  YSPAGFEHRCNRYIECTGR 8
           Y   G  H+CN++I C GR
Sbjct: 299 YMIEGKCHQCNKWIRCQGR 317


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 329 RATHLEIQVLKSQYSYN 279
           +A HLE+Q+L  QY  N
Sbjct: 305 QARHLEVQILADQYGNN 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,745
Number of Sequences: 5004
Number of extensions: 35328
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)