Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1288
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1461 - 27299891-27301870                                         28   2.7  
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575...    27   6.2  
03_06_0720 + 35739383-35739391,35739802-35740275,35740695-357411...    27   6.2  
01_07_0379 + 43177978-43178572,43178643-43178674                       27   6.2  
10_08_0093 + 14754421-14755527,14756085-14756099                       27   8.2  
07_03_1575 - 27848977-27849095,27849254-27849302,27850270-278502...    27   8.2  
03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332     27   8.2  
02_04_0196 + 20835495-20837255                                         27   8.2  
02_02_0286 - 8589736-8590857                                           27   8.2  
01_06_1749 - 39636951-39638102                                         27   8.2  

>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -2

Query: 258 RNALLHGRNRQGGGTYPRGLTSGPTTS 178
           R  LL GR R GGG + RGL   P  S
Sbjct: 287 RKKLLRGRRRGGGGGHRRGLFVFPLVS 313


>05_07_0112 - 27755604-27756449,27756624-27756887,27757428-27757532,
            27757626-27758249,27759048-27759596,27759665-27760372,
            27760449-27760658,27761266-27761421,27761524-27761664,
            27762015-27762101,27762209-27762309,27763071-27763293,
            27763384-27763548,27763621-27763713,27763801-27764292,
            27764729-27764805,27765184-27765681,27765818-27766046
          Length = 1855

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 240  GRNRQGGGTYPRGLTSGP 187
            GR+R  GG  PRG++S P
Sbjct: 1626 GRSRSRGGKVPRGISSSP 1643


>03_06_0720 +
           35739383-35739391,35739802-35740275,35740695-35741122,
           35741273-35741351
          Length = 329

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 243 HGRNRQGGGTYPRGLTSGPTTSNY 172
           HG+ R+GG   PRG T+    S Y
Sbjct: 18  HGQQRRGGSPPPRGRTTSVYRSGY 41


>01_07_0379 + 43177978-43178572,43178643-43178674
          Length = 208

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 156 QNYNLRNYWWWDHL*VRADRYHRPAYFC 239
           + + L +Y  W    VRA+RY RPA  C
Sbjct: 33  REFRLADYSSWLQRHVRAERYWRPALAC 60


>10_08_0093 + 14754421-14755527,14756085-14756099
          Length = 373

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +3

Query: 186 WDHL*VRADRYHRP--AYFCREVMRFGLKGGTAVVTIL 293
           W HL V ADRY  P     C E +   +  GTA   +L
Sbjct: 275 WQHLLVAADRYDLPRLKLICEEKLCGHIGVGTATTILL 312


>07_03_1575 -
           27848977-27849095,27849254-27849302,27850270-27850287,
           27850798-27851786,27852119-27852733,27852893-27852921,
           27853990-27854453,27854530-27854654,27854743-27855025,
           27855112-27856102,27856965-27857576,27857666-27858630
          Length = 1752

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 65  PIFLMKYVLNKGSRLTYTVK 124
           PI+L +Y+L +GS L Y +K
Sbjct: 335 PIYLAEYLLTRGSELRYGMK 354


>03_05_0353 + 23410354-23410485,23410678-23411089,23411304-23411332
          Length = 190

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 269 WDSRCNYTETLELVSQGGWRVYVVDVYGLQ 358
           W     Y++T ELV + GW+ + VD  G+Q
Sbjct: 72  WSIGVAYSDTGELVLRSGWKEF-VDANGVQ 100


>02_04_0196 + 20835495-20837255
          Length = 586

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 22  LCSDCTDVRIPQASTNFSNEIRTQQRFTIDLHGEGITSCNKY 147
           +C DC  V     S  +  EI  + R    +  +G+ SCN Y
Sbjct: 545 VCRDC-HVHSKLVSKLYEREIIVRDRHRFHVFRDGVCSCNDY 585


>02_02_0286 - 8589736-8590857
          Length = 373

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 222 RPAYFCREVMRFGLKGGT 275
           +P YFCRE  R+  +GG+
Sbjct: 67  QPRYFCRECRRYWTQGGS 84


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 292 SIVTTAVPPFKPKRITS 242
           S+ + A PPF P RITS
Sbjct: 165 SVASAAAPPFDPSRITS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,723,843
Number of Sequences: 37544
Number of extensions: 255020
Number of successful extensions: 567
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)