Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1288
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U97552-6|AAX55683.1|  216|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical
           protein F07C6.1 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 10  VRCILCSDCTDVRIPQASTNFSNEIRTQQRFTIDLHGEGITSCNKY 147
           +RC LC+ C D  +      F N I  +  F   L+      CN++
Sbjct: 43  MRCFLCAQCMDPLVGTTYFQFENRIYCEHDFK-TLYAPVCAKCNEF 87


>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 273 SHPSNRNALLHGRNRQGGGTYPRGLTSGPTTSNYANYNF 157
           +HP   + L   +N+     Y R  ++G + SNY N NF
Sbjct: 334 AHPMEYSVLTSLQNQHEQTQYARMGSNGNSNSNYGNSNF 372


>U97552-6|AAX55683.1|  216|Caenorhabditis elegans Hypothetical
           protein W05H7.4c protein.
          Length = 216

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 283 TTAVPPFKPKRITSRQK*AGRWYLSARTHKW 191
           T+   P KP+  T+RQK  G W L     +W
Sbjct: 42  TSKTTPVKPEDQTTRQKYGGTWKLRHLGMRW 72


>Z81091-5|CAB03142.1|  768|Caenorhabditis elegans Hypothetical
           protein F55H12.1 protein.
          Length = 768

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -1

Query: 382 SPPGVKWLLEPIDIYNVDAPPTLRYKF*SLSIVTTAVPP-FKPKRITSRQK 233
           +P   K  + P  +    APPT+R      ++ TT  PP  K  R  S  K
Sbjct: 3   TPVSTKKTIAPSTMKTTVAPPTMRTTMAPTTMKTTVAPPTMKTTRSPSTMK 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,440,471
Number of Sequences: 27780
Number of extensions: 208048
Number of successful extensions: 420
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)