Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1288
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   5.7  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.7  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   5.7  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   5.7  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   7.5  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   7.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   7.5  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   10.0 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   10.0 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   10.0 

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 420 FFFFLLRWVDELTAHLV 370
           FF FLL W    T  L+
Sbjct: 288 FFLFLLAWTPYATVALI 304


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 5   KTSGAFYVAIAPMFESRRRVPIFLMKY 85
           +T G   + + P F+  +   ++L KY
Sbjct: 512 ETKGMMRIFLGPAFDEIKHDMVYLQKY 538


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 7/27 (25%), Positives = 14/27 (51%)
 Frame = +2

Query: 5   KTSGAFYVAIAPMFESRRRVPIFLMKY 85
           +T G   + + P F+  +   ++L KY
Sbjct: 512 ETKGMMRIFLGPAFDEIKHDMVYLQKY 538


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 420 FFFFLLRWVDELTAHLV 370
           FF FLL W    T  L+
Sbjct: 288 FFLFLLAWTPYATVALI 304


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 2   DKTSGAFYVAIAPMF 46
           +K    FY A+ PMF
Sbjct: 149 NKVVSVFYTAVIPMF 163


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
          protein.
          Length = 134

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/15 (40%), Positives = 9/15 (60%)
 Frame = -1

Query: 73 KNWYSPAGFEHRCNR 29
          +NW  P G ++R  R
Sbjct: 32 RNWRKPKGIDNRVRR 46


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 295 DFRTCISRWVARL 333
           DF+  I RWVA +
Sbjct: 328 DFKQLIDRWVANV 340


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = +3

Query: 153 PQNYNLRNYWWWD 191
           P   N  N WWW+
Sbjct: 357 PVCQNEMNKWWWN 369


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 3   IRRPVHSM*RLHRCSNP 53
           +  PV+ + R  RC NP
Sbjct: 398 LNAPVNQLIRYTRCENP 414


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = +3

Query: 153 PQNYNLRNYWWWDHL 197
           P  Y    Y WW H+
Sbjct: 516 PVKYLTYEYPWWSHV 530


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = +3

Query: 153 PQNYNLRNYWWWDHL 197
           P  Y    Y WW H+
Sbjct: 569 PVKYLTYEYPWWSHV 583


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,440
Number of Sequences: 438
Number of extensions: 2987
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)