Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1282
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    27   2.3  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    27   2.3  
SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting endonucl...    27   3.1  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   4.1  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    25   9.5  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 574 CKYC*LFMY*SNIRSC*YFRNRPCRLSRASVT 479
           C+Y  LF+Y  N+R+C  F+N+ C +   + T
Sbjct: 6   CRYKILFLY--NLRNCFTFQNQRCLIPYGTTT 35


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 574 CKYC*LFMY*SNIRSC*YFRNRPCRLSRASVT 479
           C+Y  LF+Y  N+R+C  F+N+ C +   + T
Sbjct: 6   CRYKILFLY--NLRNCFTFQNQRCLIPYGTTT 35


>SPAC25G10.02 |cce1|ydc2|mitochondrial cruciform cutting
           endonuclease Cce1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 258

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 77  ALYRALQRNALHSEIEHGFPVSLS-EPNKEKWRARLNYNVMFS 202
           AL+ A +RN++  +I++ F +SLS +     W + LN    FS
Sbjct: 144 ALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFS 186


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -3

Query: 104 HFVEVLYTAHTLNPLSFGF 48
           HF  V YTA+ L+PL FGF
Sbjct: 7   HFYNVTYTAYRLSPL-FGF 24


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 523 YFRNRPCRLSRASVTIFFSLDSFTALDASPYE 428
           Y R   C+L      +F SL S  +LD S  E
Sbjct: 336 YLRCSSCKLKSIPKNVFLSLQSLVSLDLSGNE 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,585
Number of Sequences: 5004
Number of extensions: 58294
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)