Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1281
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 243 1e-64
02_05_0790 - 31768131-31768269,31768343-31768503,31768845-317689... 78 9e-15
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924... 69 4e-12
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 29 4.1
03_02_0904 + 12290886-12291383 29 5.5
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 28 7.2
01_02_0049 + 10641363-10641563,10641640-10641750,10641893-106421... 28 7.2
07_03_0124 - 13723597-13724657,13726179-13726413 28 9.6
05_07_0139 - 27968816-27968890,27969065-27969456,27969558-279696... 28 9.6
01_06_0168 + 27165323-27165373,27166659-27167067,27167666-271677... 28 9.6
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 243 bits (595), Expect = 1e-64
Identities = 112/163 (68%), Positives = 133/163 (81%)
Frame = +3
Query: 288 KTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGEDSKLIYD 467
K PKGTRD+ +QM IR + I VF+ HGA +DTPVFEL++ L GKYGEDSKLIYD
Sbjct: 451 KIPKGTRDFGKEQMAIREHAFSIITGVFKMHGAVSLDTPVFELRETLMGKYGEDSKLIYD 510
Query: 468 LKDQGGEILSLRYDLTVPLARYLAMNKITTLKRYHIAKVYRRDNPAMTRGRYREFYQCDF 647
L DQGGE+ SLRYDLTVP ARY+AMN I++LKRY IAKVYRRDNP ++GRYREFYQCDF
Sbjct: 511 LADQGGELCSLRYDLTVPFARYVAMNNISSLKRYQIAKVYRRDNP--SKGRYREFYQCDF 568
Query: 648 DIAGVYDPMVPDAECLKVVTEILEALDIGQYILKVNHRRLLDG 776
DIAGVY+ M PD E +KV+TE+L+ LDIG Y +K+NHR+LLDG
Sbjct: 569 DIAGVYETMEPDFEVIKVLTELLDQLDIGTYEIKLNHRKLLDG 611
>02_05_0790 -
31768131-31768269,31768343-31768503,31768845-31768973,
31769770-31769912,31770215-31770332,31771070-31771144,
31771528-31771620,31771750-31771879,31772038-31772126,
31772411-31772506,31772610-31772900
Length = 487
Score = 77.8 bits (183), Expect = 9e-15
Identities = 57/175 (32%), Positives = 95/175 (54%), Gaps = 7/175 (4%)
Frame = +3
Query: 267 GPQKFTLKTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKDVLTGKYGE 446
G + P+GTRD+ P+ M +R + D+ V R E +D PV E + + K GE
Sbjct: 65 GASVVDVNPPRGTRDFPPEDMRLRTWLFDQFREVSRVMAFEEVDFPVLESEALFIRKAGE 124
Query: 447 D-SKLIYDLKDQGGEILSLRYDLTVPLAR-YLAMNKITT--LKRYHIAKVYRRDNPAMTR 614
+ ++ +Y+ +D+GG + LR ++T LAR + K + LK + I + +R + MTR
Sbjct: 125 EITQQLYNFEDKGGRRVVLRPEITPSLARLVIKQGKSVSLPLKWFTIGQCWRYER--MTR 182
Query: 615 GRYREFYQCDFDIAGVYDPMV-PDAECLKVVTEILEALDI--GQYILKVNHRRLL 770
GR RE YQ + DI G+ P V ++E L+ + + E L I ++V+ R++L
Sbjct: 183 GRRREHYQWNMDIFGM--PKVRAESELLQAIILLFERLGITSSDVGIRVSSRKVL 235
>04_04_0350 + 24591002-24591123,24592020-24592091,24592343-24592448,
24593138-24593242,24593693-24593815,24594163-24594630,
24595226-24595351,24595430-24595516,24595615-24595701,
24595807-24595903,24596519-24596636,24596923-24596995,
24597504-24597566,24597666-24597832,24598444-24598631,
24598909-24599057,24599193-24599442,24599597-24599855,
24599977-24600073,24606696-24606776,24606914-24606970,
24607264-24607395,24607476-24607562,24607941-24608049,
24608134-24608270,24608841-24608945,24609566-24609654,
24609757-24609859,24609960-24610064,24610282-24610293,
24611013-24611078
Length = 1279
Score = 68.9 bits (161), Expect = 4e-12
Identities = 50/151 (33%), Positives = 79/151 (52%), Gaps = 6/151 (3%)
Frame = +3
Query: 339 NNVLDKIITV----FRRHGAECID-TPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLR 503
+ +LD II V F+RH A+ +P+ L+ T G+ K++ QGGE+L L
Sbjct: 849 SELLDSIIEVSKEVFKRHCAKRFQISPLHTLEGKFTENRGKTVKIL----TQGGEMLELC 904
Query: 504 YDLTVPLARYLAMNKITTLKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGVYDPMVPD 683
Y+L P + N+I + KRY ++ V+RR A+ F Q DFDI G P +P+
Sbjct: 905 YELRTPFVMSVVANQILSFKRYEVSWVHRR---AVGHSIPYRFLQGDFDIIGGASP-IPE 960
Query: 684 AECLKVVTEI-LEALDIGQYILKVNHRRLLD 773
AE +KV ++ D I+++NH +L +
Sbjct: 961 AEIVKVTLDVGAHFYDPKAIIIRLNHSKLAE 991
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 147 IQEQGDLVRKLKAAKESNERVKEEVSKL 230
++E+GD V +LKAAK S + + V++L
Sbjct: 232 VKEKGDAVAQLKAAKASKQEITAAVAEL 259
>03_02_0904 + 12290886-12291383
Length = 165
Score = 28.7 bits (61), Expect = 5.5
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Frame = +3
Query: 447 DSKLIYDLKDQGGEILS-LRYDLTVPLARYLAMNKITTLKRYHIAKVYRRDNPAMTRGRY 623
D + + + KD G++ S + D P A+ ++ L +AK YRR+ + R +
Sbjct: 62 DDEYVSETKDVIGKVRSTINMDRADPGVAD-AVAELRELSNSWVAK-YRREKSLLGRPSF 119
Query: 624 REFYQCDFDIAGVYDPMVPDAEC-LKVVTEILEALDIGQYIL 746
RE Y ++G Y P A K ILE +D + L
Sbjct: 120 REMYSALNAVSGHYISFGPTAPIPNKRRARILEEMDTAEKAL 161
>11_01_0490 -
3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3
Query: 582 VYRRDNPAMTRGRYREFYQCDFDIAGVYDPMV---PDAECLKVVTEILEAL 725
+Y A++ +YRE Q +F G+ V P+A CL + TEIL A+
Sbjct: 130 IYTSPLKALSNQKYRELSQ-EFSDVGLMTGDVTLQPNATCLVMTTEILRAM 179
>01_02_0049 +
10641363-10641563,10641640-10641750,10641893-10642123,
10642253-10642357,10642546-10642704
Length = 268
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +3
Query: 144 KIQEQGDLVRKLKAAKESNERVKEEVSKLLALKAQLV 254
K++EQ DLV+K AKE ++ K +++ + LK +++
Sbjct: 162 KVEEQLDLVQKFLEAKELSQLEKNQMTTVHELKKKVL 198
>07_03_0124 - 13723597-13724657,13726179-13726413
Length = 431
Score = 27.9 bits (59), Expect = 9.6
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Frame = -1
Query: 546 YSLLNT-EPKVQSN--HILMKEFLHLGLSNHRLILNPHHTSQ*AH---PLAQKLVYQYTQ 385
Y LL T EPK + IL+ L L LS + + H H L+ L Q++
Sbjct: 157 YVLLRTQEPKTMFSAFSILLGLQLALSLSTKETLPSSHRNWNICHVRTSLSDNLRKQFSN 216
Query: 384 LRVS*-KL*LFYPIHYFVLSFAV 319
LR + + +FYP+ + + SFAV
Sbjct: 217 LRTAISEEQIFYPLMWIMTSFAV 239
>05_07_0139 -
27968816-27968890,27969065-27969456,27969558-27969640,
27969841-27969933,27970012-27970223,27970604-27970753,
27971195-27971254,27971369-27971496,27972008-27972416,
27973514-27973570
Length = 552
Score = 27.9 bits (59), Expect = 9.6
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +3
Query: 405 VFELKDVLTGKYGEDSKLIY---DLKDQG-GEILSLRYDLTVPLARYLAMNKITTLKRYH 572
+ E+K ++ D K IY +L D +++ DLT ++ + LK H
Sbjct: 95 IVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIH 154
Query: 573 IAKVYRRD-NPA-MTRGRYREFYQCDFDIAGV 662
A VY RD P + + CDF +A V
Sbjct: 155 TANVYHRDLKPKNILANANCKLKICDFGLARV 186
>01_06_0168 +
27165323-27165373,27166659-27167067,27167666-27167793,
27167905-27167964,27169126-27169275,27169358-27169513,
27169643-27169854,27169983-27170084,27170351-27170430,
27170515-27170939
Length = 590
Score = 27.9 bits (59), Expect = 9.6
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Frame = +3
Query: 405 VFELKDVLTGKYGEDSKLIY---DLKDQG-GEILSLRYDLTVPLARYLAMNKITTLKRYH 572
+ E+K ++ D K IY +L D +++ DLT ++ + LK H
Sbjct: 93 IVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIH 152
Query: 573 IAKVYRRD-NPA-MTRGRYREFYQCDFDIAGV 662
A VY RD P + + CDF +A V
Sbjct: 153 TANVYHRDLKPKNILANANCKLKICDFGLARV 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,628,549
Number of Sequences: 37544
Number of extensions: 361381
Number of successful extensions: 769
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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