Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1280
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0173 - 13749975-13750052,13751097-13751216,13752095-137523...    28   9.8  
03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409...    28   9.8  

>08_02_0173 -
           13749975-13750052,13751097-13751216,13752095-13752348,
           13752353-13752651,13753091-13753197,13753293-13753431,
           13753863-13754030,13755367-13755476,13755830-13755934,
           13757398-13757499,13757546-13757671,13757843-13758055,
           13758133-13758195
          Length = 627

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 379 GVLFFEIKEHLLRYNYNSQTYYAVATLFVNN 471
           GVLF++I E L  + YN+  Y +V    V+N
Sbjct: 219 GVLFYKILEELHSHLYNNGEYSSVTLSMVDN 249


>03_05_0510 +
           25039408-25039455,25040627-25040641,25040832-25040991,
           25041116-25041192,25041324-25042528,25042537-25042621,
           25043068-25043130,25043207-25043263,25043299-25043361,
           25043560-25043643,25043730-25044320,25044535-25044663
          Length = 858

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 286 FSSYTLHHFIPN*RPATAPLGSLTKISRIFDG 381
           FS  TL H + +  P++AP G+  K+  +FDG
Sbjct: 808 FSGLTLRH-VDSSSPSSAPCGAREKMVTLFDG 838


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,287,787
Number of Sequences: 37544
Number of extensions: 307604
Number of successful extensions: 461
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)