Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1279
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    42   1e-04
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    27   3.9  
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom...    26   5.2  
SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces p...    26   6.9  
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra...    26   6.9  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.1  

>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 19/37 (51%), Positives = 23/37 (62%)
 Frame = +3

Query: 222 YGLCIAEDDGEVDWAFPCLDANEPCSKFGFTCLGLIE 332
           + L I EDDGE+D  FP LD   P SKFGF    L++
Sbjct: 346 WNLRIVEDDGELDEDFPALDRVGPLSKFGFDAFALVK 382


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = +3

Query: 243 DDGEVDWAFPCLD--ANEPCS---KFGFTC 317
           D GE++W  PCL   A+ PC    K  F+C
Sbjct: 191 DTGEINWDCPCLGGMAHGPCGEEFKAAFSC 220


>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 243 DDGEVDWAFPCLDANEPCSK 302
           D GE DW    +D N+P +K
Sbjct: 154 DQGETDWKILAIDINDPRAK 173


>SPAC23C11.05 |||inorganic pyrophosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 225 GLCIAEDDGEVDWAFPCLDANEP 293
           G+    D+GE DW    +D N+P
Sbjct: 143 GVMALLDEGETDWKVIVIDVNDP 165


>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 294 CSKFGFTCL-GLIELKNKKSFNSPPIPMPDDGHVFHLFPKMTDSGQSH 434
           C+   F CL  LI+   K+   +  + +       +LFP+  D+GQ H
Sbjct: 89  CNSLAFCCLVTLIDGLRKQGAENVTLTLFAIAQGQYLFPESVDNGQKH 136


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 85   AGKSNAIYRRIAKTNIKRTCKIETS 11
            +GK N++ RR+  T I  T  I++S
Sbjct: 2783 SGKVNSVMRRLVSTEISNTPNIDSS 2807


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,019
Number of Sequences: 5004
Number of extensions: 61669
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)