Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1279
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117195-13|CAB55023.2|  455|Caenorhabditis elegans Hypothetical...    48   1e-05
Z68118-4|CAD18873.1|  235|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z68118-3|CAA92190.2|  280|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z82069-1|CAB04902.1|  667|Caenorhabditis elegans Hypothetical pr...    30   2.1  

>AL117195-13|CAB55023.2|  455|Caenorhabditis elegans Hypothetical
           protein Y57A10A.20 protein.
          Length = 455

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 22/51 (43%), Positives = 34/51 (66%)
 Frame = +3

Query: 207 GSVHEYGLCIAEDDGEVDWAFPCLDANEPCSKFGFTCLGLIELKNKKSFNS 359
           G V +Y   +AE+DGE++   P LD+++   + GFTCLGL+  + KK+ NS
Sbjct: 212 GEVDDYQFYLAEEDGEIEHELPPLDSSKLVGQVGFTCLGLVS-RIKKNGNS 261


>Z68118-4|CAD18873.1|  235|Caenorhabditis elegans Hypothetical
           protein R01E6.3b protein.
          Length = 235

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 321 GLIELKNKKSFNSPPIPMPDDGHVFHLFP 407
           GLI+   K + N+ PI MP D H+ HL P
Sbjct: 140 GLIDTVRKATGNATPIAMPKDFHIEHLLP 168


>Z68118-3|CAA92190.2|  280|Caenorhabditis elegans Hypothetical
           protein R01E6.3a protein.
          Length = 280

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +3

Query: 321 GLIELKNKKSFNSPPIPMPDDGHVFHLFP 407
           GLI+   K + N+ PI MP D H+ HL P
Sbjct: 185 GLIDTVRKATGNATPIAMPKDFHIEHLLP 213


>Z82069-1|CAB04902.1|  667|Caenorhabditis elegans Hypothetical
           protein W04A8.1 protein.
          Length = 667

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 252 EVDWAFPCLDANEPCSKFGFTCLGLIELK---NKKSFNSPPIPMPDDGHVF 395
           +V W   CLD  + C +  F+ +GL  LK    + S    P P+ D+   F
Sbjct: 171 DVKWIQECLDNRQKCKENDFSMIGLRYLKQSCRRLSSFREPTPLGDEEETF 221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,145,302
Number of Sequences: 27780
Number of extensions: 348170
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)