Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1277
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   3.0  
SPAC24B11.08c |||COPII-coated vesicle component Erv46|Schizosacc...    26   5.2  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 661 LFESAISTKSCCLVDWGQKYTDRYNIF 741
           L E+ I     CL+D   K  DRYNIF
Sbjct: 780 LNEAKIQIMHACLIDVCLKNRDRYNIF 806


>SPAC24B11.08c |||COPII-coated vesicle component
           Erv46|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +1

Query: 505 FLN*HRVIRVTKSRRKPEGGETRECNMNI--PSIPYQDV*RLDTYEAAQESSKTLFESAI 678
           ++N  RVI V +    P  G+  E N NI  P IP Q +  +D  + + E  + +  +  
Sbjct: 46  WINYRRVIAVHEIIVNPSHGDRMEINFNITFPRIPCQ-ILTVDVLDVSGEFQRDIHHTVS 104

Query: 679 STK 687
            T+
Sbjct: 105 KTR 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,355
Number of Sequences: 5004
Number of extensions: 48893
Number of successful extensions: 82
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)