Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1276
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 29 0.52
SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr 2|... 28 1.6
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 28 1.6
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz... 27 2.8
SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c... 27 3.7
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 4.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 6.4
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 26 6.4
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac... 26 6.4
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 25 8.5
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 29.5 bits (63), Expect = 0.52
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 735 FLAAESAANGAVWV-TALQASHTYASQVLRTTLHFHLNSAAGMLTWTEEEGTVD*WVTIE 559
F+ A N + + T L A Y+ Q + LN L++ E G +D W+ +
Sbjct: 76 FIVRSEADNETILLKTQLIAEDIYSRQEETLIVWQELNGTDLALSFQESSGCIDMWMFLA 135
Query: 558 NVQSVLA 538
NVQ ++
Sbjct: 136 NVQKAIS 142
>SPBC24C6.11 |cwf14||G10 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 146
Score = 27.9 bits (59), Expect = 1.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 661 TCVCMGCLERCDPDRTIRCRFCG 729
TC+C + D D+ +RC CG
Sbjct: 116 TCICRVPKSKLDKDQRVRCTHCG 138
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 376 RRLDFSTFNLLPKHKVNSYQIKIEDEGNHGNDDTRLFILSTLAGQHKPRVSCALCKDTL- 552
RRLDF F P ++ Y ++++ H + F L T A + + R +C C +
Sbjct: 601 RRLDFQHFLQRPTQRLQRYTLELDTILKHTEQSSWDFQLITQAVK-ELRATCEECDAVIA 659
Query: 553 DVFDRYPLVDGTFFLSPRQHTSSAVEVK 636
V + + D ++ L + H S +E++
Sbjct: 660 TVLEANRIRDLSYQLLFKNHESVNLELR 687
>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 900
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -3
Query: 587 VPSTNG*RSKTSRVSLQSAHETLGLCC 507
V NG S RV+L E LGLCC
Sbjct: 326 VNRVNGKESYQQRVNLSPHEEILGLCC 352
>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = +1
Query: 412 KHKVNSYQIKIEDEGNHGND----DTRLFILSTLAGQHKPRVSCALCK 543
KH+++S IK+ D +HGN+ D++L I + + + +C+
Sbjct: 115 KHQLDSEAIKLLDIADHGNEEISMDSQLEITGNILSETEKMAYAGVCR 162
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 26.2 bits (55), Expect = 4.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 723 ESAANGAVWVTALQASHTYASQVLRTTL 640
+ +NGA W +ALQ++ S L T+
Sbjct: 24 QEVSNGATWASALQSTKDVPSHALTKTI 51
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 156 KIGSYTTSCYRWPIQSIQSFEFRF 227
K+GS+T C++ PI+ I ++ F
Sbjct: 1069 KMGSFTMLCHKQPIEEILNYASNF 1092
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 317 SQKSFLIVLELGLAPMASSHEDSISPPSTYYRNTKSTLTRSRLKMKATTATTIHVFSSF- 493
+++ + G+A +A S +I +TY +T + +R M +T + SS
Sbjct: 77 NKRGMYLAYAFGIAILACSWASAIQSSTTYSYQVYATASFNRTSMISTLEIATAIISSVC 136
Query: 494 PPWLGNIS 517
P LG S
Sbjct: 137 KPILGKFS 144
>SPCC777.14 |prp4||serine/threonine protein kinase
Prp4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 477
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 406 LPKHKVNSYQIKIEDEGNHGNDDTRLFILSTLAGQHKPRVSCALCKDTLD 555
+PK K N+ +I+I EG+ N +T+L + ++ S +DT D
Sbjct: 59 VPKMKTNASKIEINKEGS--NSNTKLDVTNSTTSDSPSIKSSVQIEDTED 106
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 392 PPSTYYRNTKSTLTRSRLKMKATTATTIHVFSSFPPWLGNISPGS 526
P + YR ST ++S ++ + +I + S+ PP L N+S GS
Sbjct: 312 PRRSNYRRRISTSSKSLYELSPSKFKSIPITSNPPPML-NLSKGS 355
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,211
Number of Sequences: 5004
Number of extensions: 65189
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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