Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1276
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 32 0.41
10_08_1061 - 22622805-22622961,22623262-22623441,22623482-226234... 32 0.55
08_01_0384 + 3414291-3414508,3414509-3414755,3415864-3416013,341... 29 2.9
02_05_1277 - 35408097-35409080 29 2.9
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 29 2.9
11_06_0263 + 21777178-21777342,21777742-21777823,21777939-217780... 29 3.9
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424... 29 3.9
10_01_0025 - 328105-328188,328281-328337,328680-328734,328809-32... 29 5.1
03_05_0083 - 20616432-20616469,20616666-20617119 29 5.1
06_03_1189 + 28271185-28271394,28272421-28273326 28 6.7
01_01_0698 - 5400401-5401015 28 6.7
08_02_1460 + 27295201-27295269,27295968-27296074,27296252-272963... 28 8.9
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313... 28 8.9
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 32.3 bits (70), Expect = 0.41
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 406 LPKHKVNSYQIKIEDEGNHGNDDTRLFILSTLAGQHKPRVSCALCKDTLDVFD 564
LP+HK NSY ++ + G ++ + + P + C+LC T+ ++D
Sbjct: 312 LPEHKQNSYSASVKKDKGKG----KIHVKDSGCSMRSPLLDCSLCGATVRIWD 360
>10_08_1061 -
22622805-22622961,22623262-22623441,22623482-22623489,
22623682-22623845,22623969-22624134
Length = 224
Score = 31.9 bits (69), Expect = 0.55
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 739 PIFGRRIGSEWCGL--GHSAPGIPYIRKSSIAYDPPLS 632
P+ G R +WCG+ GH+ PG+P + + PPLS
Sbjct: 43 PLDGSR---DWCGVFDGHAVPGVPPFSPAPLRPHPPLS 77
>08_01_0384 +
3414291-3414508,3414509-3414755,3415864-3416013,
3416419-3416476,3416556-3416648,3416775-3416807,
3417357-3417448,3417544-3417603,3417729-3417995
Length = 405
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 233 EQEPELERLNALDRPSVAAGSVRPDL 156
E EPE E L++ D PS+++G PD+
Sbjct: 362 ETEPEEEELDSTDLPSLSSGMPSPDM 387
>02_05_1277 - 35408097-35409080
Length = 327
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +2
Query: 233 RHRLLHLSLPPVQHMLQHTT*LRPKEAPSQK---SFLIVLELGLAPMASSHEDSISPP 397
RHR LH PP + T AP K S I LEL L A S E+S+SPP
Sbjct: 236 RHRPLHA--PPERAATTAATTAATATAPDTKKEGSTSINLELDLNLPAPSDEESVSPP 291
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 29.5 bits (63), Expect = 2.9
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Frame = +1
Query: 334 DRVRAGAGANGIFSRRLDFSTFNLLPK-HKVNSYQIKIEDEGNHGNDDTRLFILSTLAGQ 510
+R +A + + + S L F ++ H+V Q+ +EGNH D++ + L ++ +
Sbjct: 256 NRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFLRSIGLR 315
Query: 511 HKPRV-----SCALCKDTLDVFDRYP-LVDGTFFLSPRQ 609
R C+L K L +P +VD +F RQ
Sbjct: 316 EYSRYLTFNHPCSLEKPLLAHLRFFPWVVDEVYFKVWRQ 354
>11_06_0263 +
21777178-21777342,21777742-21777823,21777939-21778028,
21778447-21778604,21778852-21778873,21779048-21779175,
21779486-21779685,21780600-21780663,21781594-21781704,
21781804-21781941,21782306-21782448,21782521-21782575,
21782921-21782977,21783093-21783176
Length = 498
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 504 WAT*AQGLMRTLQGHSGRFRSLPISRRYLLPQSTSAY 614
W T L++TLQGH SL +S Y+L T AY
Sbjct: 291 WETSQGKLVKTLQGHGHWVNSLALSTEYIL--RTGAY 325
>06_01_0590 -
4240260-4240883,4241063-4242238,4242691-4242760,
4243739-4243803
Length = 644
Score = 29.1 bits (62), Expect = 3.9
Identities = 26/78 (33%), Positives = 37/78 (47%)
Frame = +1
Query: 334 DRVRAGAGANGIFSRRLDFSTFNLLPKHKVNSYQIKIEDEGNHGNDDTRLFILSTLAGQH 513
D V G G + SR L T +LL K + DEG G+D +L +S++A Q
Sbjct: 520 DDVGGGGGGDWSKSRALPTPTPSLLKKQLGSLKLAAAGDEGGGGDDGRQLARVSSVANQ- 578
Query: 514 KPRVSCALCKDTLDVFDR 567
R+S L + +FDR
Sbjct: 579 SSRLS--LSSRSRRMFDR 594
>10_01_0025 -
328105-328188,328281-328337,328680-328734,328809-328951,
330772-330909,331010-331120,332621-332684,334179-334378,
334678-334805,335468-335593,335828-335917,336035-336116,
336845-336910
Length = 447
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 504 WAT*AQGLMRTLQGHSGRFRSLPISRRYLLPQSTSAY 614
W T L++TLQGH SL +S Y+L T AY
Sbjct: 240 WETSQGKLVKTLQGHGHWVNSLALSTEYVL--RTGAY 274
>03_05_0083 - 20616432-20616469,20616666-20617119
Length = 163
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 278 ACVGLVEGSDGADGGEQEPELERLNALDRPSVAAGSVRPDLV 153
A + +V G G GGE+E + + + RP+ A S P L+
Sbjct: 2 AYLEVVVGEGGEGGGEREGKEKPAEGMGRPASACSSAAPSLL 43
>06_03_1189 + 28271185-28271394,28272421-28273326
Length = 371
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = -3
Query: 392 EKSSLREKMPLAPAPALTRSEMTSGLELLLAGVMLCVGAC--VGLVEGSDGADGGEQ 228
E + R ++PL PAP + E AG C V +VEG DG GG++
Sbjct: 103 EAPAARGELPLVPAPFVPEGEFLGPARFATAG---CAAGFMRVAVVEG-DGGGGGQE 155
>01_01_0698 - 5400401-5401015
Length = 204
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +1
Query: 664 CVCMGCLERCDPD--RTIRCRFCGQKW 738
C C G E C P+ R +R R+CG +W
Sbjct: 86 CECCGMQEECTPEYARRVRERYCG-RW 111
>08_02_1460 +
27295201-27295269,27295968-27296074,27296252-27296384,
27296621-27296714,27296828-27297030,27297167-27297240,
27297331-27297406,27297530-27297585,27297939-27298026,
27298115-27298255,27298338-27298487,27299015-27299221
Length = 465
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +2
Query: 254 SLPPVQHMLQHTT*LRPKEAPSQKSFLIVLEL-----GLAPMASSHEDSISPPSTYYRNT 418
SL + +L TT L + S + F+ L+L G +S + S+ PP T+Y
Sbjct: 378 SLMNIASVLDVTTKLESRHVTSPEKFIETLKLMEHRYGAKDFETSKDTSLLPPGTFYLTK 437
Query: 419 KSTLTRSRLKMKA 457
++ R KA
Sbjct: 438 VDSMYRRFYDKKA 450
>01_01_0417 -
3135502-3135672,3135759-3135947,3136037-3136154,
3136398-3137048,3137146-3137309,3138598-3139098
Length = 597
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +1
Query: 490 LSTLAGQHKP---RVSCALCKDTLDVFDRYPLVDGTFFLSPRQHTSSAVEVKVEGRTQYL 660
+ST + KP +SC L F R+P+ FFLSPR +E VE +L
Sbjct: 184 ISTAIKESKPVYISISCNLPSIPHPTFSRHPV---PFFLSPRLSNQMNLEAAVETAAAFL 240
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,666,951
Number of Sequences: 37544
Number of extensions: 513255
Number of successful extensions: 1641
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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