Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1276
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81097-5|CAB03168.1| 243|Caenorhabditis elegans Hypothetical pr... 94 1e-19
AF016450-13|AAB65988.2| 472|Caenorhabditis elegans Hypothetical... 40 0.002
U41110-5|AAA82420.2| 250|Caenorhabditis elegans Hypothetical pr... 30 1.5
U23454-6|AAC46521.1| 192|Caenorhabditis elegans Hypothetical pr... 29 2.6
U64859-1|AAC69092.2| 468|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical pr... 28 7.9
U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical p... 28 7.9
DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-lik... 28 7.9
AC024838-4|AAF60819.1| 99|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z81097-5|CAB03168.1| 243|Caenorhabditis elegans Hypothetical
protein K07A1.7 protein.
Length = 243
Score = 93.9 bits (223), Expect = 1e-19
Identities = 42/110 (38%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
Frame = +1
Query: 361 NG-IFSRRLDFSTF-NLLPKHKVNSYQIKIEDEGNHGNDDTRLFILSTLAGQHKPRVSCA 534
NG +F +R D++ +++P+ K N IK+ED+ G DD RL +L +L + + C
Sbjct: 47 NGSVFHKRSDYNNLLSVIPRSKFNGIHIKMEDDCPQGGDDVRLCLLKSLGAHNLRAIPCV 106
Query: 535 LCKDTLDVFDRYPLVDGTFFLSPRQHTSSAVEVKVEGRTQYLTCVCMGCL 684
CKD L V+D+YPL+DG F++SP E+ ++GR YL +C CL
Sbjct: 107 QCKDELKVYDKYPLIDGVFYISPVSQFGPKTEISLDGRRFYLQQLCARCL 156
>AF016450-13|AAB65988.2| 472|Caenorhabditis elegans Hypothetical
protein B0238.9 protein.
Length = 472
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 1 RHQNLWTKKGYDLAFKACGCRCGRGHLKKD 90
R NLW +KG L K C CRC RG + +D
Sbjct: 99 RRNNLWERKGQSLIGKFCRCRCDRGQMTRD 128
>U41110-5|AAA82420.2| 250|Caenorhabditis elegans Hypothetical
protein ZK682.7 protein.
Length = 250
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = -2
Query: 696 VTALQASHTYASQVLRTTLHFHLNSAAGMLTWTEEEGTVD 577
+T L + TY+ Q++ ++ H+ AG+++W + E D
Sbjct: 130 LTDLIENDTYSDQMIMNSIRRHMEKLAGVISWDDLEKAAD 169
>U23454-6|AAC46521.1| 192|Caenorhabditis elegans Hypothetical
protein C10A4.7 protein.
Length = 192
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 138 LFLLCSDCCSRR*PIKIFFQVPSATSAAACLECQVVTFF 22
++ C+ SRR P FFQ P +T CQ + FF
Sbjct: 1 MYQCCAALNSRREPRADFFQEPHSTDMYTYFPCQEICFF 39
>U64859-1|AAC69092.2| 468|Caenorhabditis elegans Hypothetical
protein R09F10.3 protein.
Length = 468
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 359 PMASSHEDSISPPSTYYRNTKSTLTRSRLKMKATTATT 472
P S H S+ P +T T S T S ATT TT
Sbjct: 75 PQGSEHPGSVDPAATTTAATTSASTTSITSTAATTTTT 112
>Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 110 PGGNQSRSFFKCPRPHRQPHALNAKS 33
PGGNQS F+CPR R H + +S
Sbjct: 127 PGGNQSGIQFQCPR--RPNHGVEGRS 150
>Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 110 PGGNQSRSFFKCPRPHRQPHALNAKS 33
PGGNQS F+CPR R H + +S
Sbjct: 127 PGGNQSGIQFQCPR--RPNHGVEGRS 150
>U64848-10|AAB04888.1| 168|Caenorhabditis elegans Hypothetical
protein C50E3.2 protein.
Length = 168
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -3
Query: 401 LKVEKSS--LREKMPLAPAPALTRSEMTSGLELLLA-GVMLCVGACV 270
LK SS LRE + PAP++T S+ G +L L C+ C+
Sbjct: 113 LKRNSSSTILREPIDKCPAPSITLSQCEEGWKLFLRYNAYYCLKVCI 159
>DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-like
protein.
Length = 1010
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 110 PGGNQSRSFFKCPRPHRQPHALNAKS 33
PGGNQS F+CPR R H + +S
Sbjct: 135 PGGNQSGIQFQCPR--RPNHGVEGRS 158
>AC024838-4|AAF60819.1| 99|Caenorhabditis elegans Hypothetical
protein Y59E9AL.5 protein.
Length = 99
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 213 KTECSGSAICSSW*CTTRSCASTTLLFLLCSDCCS 109
K E + + +C CTT SC S + CS CCS
Sbjct: 59 KKESTTTKVCVQDDCTTCSCTSASRC-SRCSPCCS 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,984,617
Number of Sequences: 27780
Number of extensions: 392795
Number of successful extensions: 1201
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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