Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1274
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 30 0.29
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 0.51
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.2
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 28 1.6
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 28 1.6
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 26 4.8
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb... 26 4.8
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 26 6.3
SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces pomb... 25 8.3
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 30.3 bits (65), Expect = 0.29
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 109 SSTANSVSSTPQTKKEEKKNKPTIELPDEVPDDLRQQLLSSGILDNAD 252
S + S+ + +E+ N+ + + PD D+R Q LSS DNA+
Sbjct: 75 SGSDQQYSAEAEANQEDDLNETSQQAPDPSSYDIRGQALSSATWDNAE 122
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 29.5 bits (63), Expect = 0.51
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +1
Query: 247 ADISVLDYDKVGDTPLDSLPPDQLANFFSAGGAQQISSSENRPIVVKPD-GSHIESRIDQ 423
A + LDY+K GD P+ LP + + + + I + PD S E +
Sbjct: 82 ATLQELDYNKAGDPPI--LPKQAKDDHHIKRSSSETADFTPFRIPINPDERSEYEKEFRE 139
Query: 424 DMEDDQEGAASENVPSYVAPP 486
++ ++ A +PS +A P
Sbjct: 140 NLRGHEDSARPGCMPSSIAKP 160
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 38 HHRHSTTNRHLDQLKSDRPLQNMYHQP 118
HHRHSTTN H + DR + H P
Sbjct: 165 HHRHSTTNYH--SKRDDRYERRREHSP 189
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +1
Query: 88 PTTPKYVSSTAN--SVSSTPQTKKEEKKNK 171
P TPK SSTAN S SS E KK K
Sbjct: 656 PVTPKQKSSTANKGSTSSPSPPSSESKKTK 685
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Frame = +1
Query: 235 ILDNADISVLDYDKVGDTPLDSLPPDQLAN---FFSAGGAQQISSSENRPIVVKPDGSHI 405
IL ++ DY+K G T + SL ++ S+ A+ +SSS NRP+ V S++
Sbjct: 64 ILSERSVTRDDYEK-GKTIVSSLALSSISGKDGSISSQNAEGLSSSSNRPLDVNDALSYL 122
Query: 406 E 408
E
Sbjct: 123 E 123
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 280 GDTPLDSLPPDQLANFFSAGGAQQISSSENRPIVVKPDGSHI 405
G P SLPP + GG I SE P+ + + +H+
Sbjct: 248 GHLPSSSLPPLEAIPSHYTGGFMGIKKSEAPPVPYQQEFTHV 289
>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/95 (21%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Frame = +1
Query: 133 STPQTKKEEKKNKPTIELPDEV--PDDLRQQLLSSGILDNAD-ISVLDYDKVGDTPLDSL 303
S+P KK+ P+ ++ D V P + +Q + S + D + +L +K+ + +D +
Sbjct: 317 SSPAEKKQNHVPSPSEKIQDHVPSPSEKKQDRVPSPSNNKEDHLPLLSDEKLDKSAIDKI 376
Query: 304 PPDQLA-----NFFSAGGAQQISSSENRPIVVKPD 393
P L + + G + +S + P + P+
Sbjct: 377 EPTPLPSVHMNSHIAKGELPKFHNSTDNPFLTPPE 411
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 97 PKYVSSTANSVSSTPQTKKEEKKNKP 174
PK+ S T+++VSSTP + + P
Sbjct: 150 PKFTSDTSSTVSSTPSLNHSLQNSMP 175
>SPCC584.11c |||Svf1 family protein Svf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = -3
Query: 647 FRILLMEDTYYIFYHLTRLDLSGWRSLVHNHLLFFDLQEFSDRKWTT 507
F I E Y F L +L W + + FDL+ + WT+
Sbjct: 61 FYIKPNEGDYMCFVQLIHSNLGSWTTTAQSTCRIFDLKHPENDLWTS 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,432
Number of Sequences: 5004
Number of extensions: 56566
Number of successful extensions: 234
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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