Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1274
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1474 - 26766078-26766536,26766634-26766885,26767201-267674... 33 0.23
11_02_0131 + 8651175-8651313,8651567-8651743,8651761-8651879,865... 31 0.93
05_01_0177 + 1231679-1231753,1232259-1232546,1232608-1232685,123... 31 0.93
07_03_0860 + 22057309-22058453,22059833-22059964,22060328-220604... 31 1.2
11_02_0117 + 8480350-8480424,8480958-8481223,8481254-8481374,848... 30 2.2
10_06_0112 + 10899079-10900656,10900761-10900920,10900948-109010... 29 3.8
11_06_0258 + 21750922-21752272,21752971-21753377 28 6.6
11_04_0331 + 16456577-16456579,16456664-16456911,16457625-164578... 28 6.6
09_01_0016 - 376742-376883,377973-378964 28 8.7
02_03_0275 + 17185335-17185895,17186460-17186516,17187360-171884... 28 8.7
>07_03_1474 - 26766078-26766536,26766634-26766885,26767201-26767401,
26767986-26768156,26768249-26768433,26768526-26768851,
26769430-26770631
Length = 931
Score = 33.1 bits (72), Expect = 0.23
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 304 PPDQLANFFSAGGAQQISSSENRPIVVKPDGSHIESRIDQDMEDDQEGAASENVPSYV 477
P +++ NF SAG Q SS + + IE + D E+D A ++VP+ V
Sbjct: 838 PANRMMNFVSAGVQAQAESSSRQQQAAATNNEDIELPDESDEEEDDVQIAEKSVPAAV 895
>11_02_0131 +
8651175-8651313,8651567-8651743,8651761-8651879,
8652179-8652589
Length = 281
Score = 31.1 bits (67), Expect = 0.93
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Frame = +1
Query: 127 VSSTPQTKKE-EKKNKPTIELPDEVPDDLRQQLLSSGILDNADISVLDYDKVGDTPLDSL 303
+++ P+ + E EK + + + PD+L+Q + S +LD DI V D + + D++
Sbjct: 140 ITAMPKGRVETEKLDSFNMPMYGPSPDELKQLVQQSQLLDIMDIEVFDLSHLTN---DAV 196
Query: 304 PPDQLANFFSAGGAQQISSSE---NRPIVVKP-DGSHIESRIDQDMEDDQEGAASENVPS 471
+L +A Q E N +K GS ES + + DD + NV
Sbjct: 197 EKSKLEVGATADATQDNVHEEIGRNIAATLKAVMGSLFESHFGESIIDDLFAVFAHNVTQ 256
Query: 472 YVAPPKQAVEMKVV 513
+ P++ + V+
Sbjct: 257 QLETPEKKGSVTVI 270
>05_01_0177 +
1231679-1231753,1232259-1232546,1232608-1232685,
1233458-1233673,1233862-1233981,1234079-1234804
Length = 500
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 340 GAQQISSSENRPIVVKPDGSHIESRIDQDMEDDQEGAASENVPSYVAPPKQA 495
G Q+ V+ + S + DD+ A+S +VPSY+AP K A
Sbjct: 374 GLSQVDDDAKSVFSVQSERPRRHSIATSTVRDDESLASSPSVPSYMAPTKSA 425
>07_03_0860 + 22057309-22058453,22059833-22059964,22060328-22060412,
22061666-22061867,22062273-22062344,22062509-22062573,
22062682-22062741,22063033-22064379,22064463-22064607,
22064688-22067442,22068540-22068630,22068655-22068873
Length = 2105
Score = 30.7 bits (66), Expect = 1.2
Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 12/134 (8%)
Frame = +1
Query: 112 STANSVSSTPQTKKEEKKNKPTIE------LPDEVPDDLRQQLLSSGILDNADISVLDYD 273
S+A S S + + +E K+ I + ++V DL + +SSG N V D
Sbjct: 1094 SSARSTSESTENVQEVGKSDVAIGDSEKSGITNKVSPDLTKDDISSGSTGNESHEVCTLD 1153
Query: 274 KVGDTPLDSLPPDQLANFFSAGGAQQI----SSSENRPIVVKPDGSHIESRIDQDMEDDQ 441
P+ + PD L S Q+ SSS + V+ D SH + D+ DD
Sbjct: 1154 LAEQLPVGASNPDNLDTATSVTDQGQLLKEPSSSVSDENVIM-DRSHQSAEKMSDLVDDT 1212
Query: 442 EG--AASENVPSYV 477
A+SE +P +
Sbjct: 1213 VASVASSETLPESI 1226
>11_02_0117 +
8480350-8480424,8480958-8481223,8481254-8481374,
8481463-8481726,8482210-8482581
Length = 365
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 157 EKKNKPTIELPDEVP--DDLRQQLLSSGILDNADISVLDYDKVGDTPLDSLPP 309
EK+ + +P P D+L+Q + + +LD +DI +L+ D P+D L P
Sbjct: 246 EKEKLDSFNIPIYCPSVDELKQLVWQNNLLDISDIQLLEMD---GNPMDDLEP 295
>10_06_0112 +
10899079-10900656,10900761-10900920,10900948-10901028,
10901264-10901517
Length = 690
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/83 (27%), Positives = 36/83 (43%)
Frame = +2
Query: 455 QKMYQVTLPRRNKQLK*KLSIFDPKTPEGQKIADDYVQENATQIDPVALNDKKYNRYLPL 634
Q++ + PR +L + F P P+G + D+ E T+ L DK + YL
Sbjct: 222 QQLMALVPPRLPPELADAAATFSPLAPQGVTVKDERTLERCTKSLQCVLVDKIHGFYLEA 281
Query: 635 KVSGNQFPLPDILKGRKITSVVV 703
Q +L+GR SVV+
Sbjct: 282 LALLPQ----HLLRGRYHRSVVM 300
>11_06_0258 + 21750922-21752272,21752971-21753377
Length = 585
Score = 28.3 bits (60), Expect = 6.6
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +1
Query: 205 DLRQQLLSSGILDNADISVLDYDKVGDTPLDSLPPDQLANFFSAGGAQQISSSENRPIVV 384
DL + S ++ A+ V ++ V + LDS PDQ+A F++ G SS+ + +
Sbjct: 503 DLTLDVASPITINLAEQLVRLWEAVRNVQLDSEEPDQIAWKFTSNGHYTASSAYHAQYLE 562
Query: 385 KPDGS 399
P+ S
Sbjct: 563 APNSS 567
>11_04_0331 +
16456577-16456579,16456664-16456911,16457625-16457812,
16458293-16458489,16458579-16458768,16458865-16459084,
16459169-16459376,16459508-16459642,16459725-16459916,
16459999-16460171,16460266-16460454,16460539-16460655,
16460734-16460818,16460900-16461052,16461135-16461260,
16461391-16461573,16461823-16461984,16462098-16462214
Length = 961
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 385 KPDGSHIESRIDQDMEDDQEGAASENVPSYVA 480
+P G+++E R+ D+EDD AA + P ++
Sbjct: 738 QPKGANLEDRVPTDVEDDPLAAARQADPDILS 769
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 367 NRPIVVKPDGSHIESRIDQDMEDDQEGAASEN 462
N IV+ P + ES D D +DDQE A N
Sbjct: 125 NNAIVLAPPNNQ-ESESDSDSDDDQESALKAN 155
>02_03_0275 +
17185335-17185895,17186460-17186516,17187360-17188454,
17188527-17188607
Length = 597
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +1
Query: 196 VPDDLRQQLLSSGILDNADISVLDYDKVGDTPLDSLPPDQ---LANFFSAGGAQQ 351
VP+ L + ++S+ LD++D+S TPL+ +Q + FS A Q
Sbjct: 239 VPNHLLRDMISAWCLDHSDLSPSTTSDTPSTPLEPSEEEQIQRILKLFSGNSASQ 293
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,768,708
Number of Sequences: 37544
Number of extensions: 370667
Number of successful extensions: 1192
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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