Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1274
(727 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC114430-1|AAI14431.1| 1203|Homo sapiens SPOCD1 protein protein. 32 2.4
AK131447-1|BAD18592.1| 1216|Homo sapiens protein ( Homo sapiens ... 32 2.4
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein. 31 3.2
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ... 31 4.2
BC113746-1|AAI13747.1| 1087|Homo sapiens 2'-5'-oligoadenylate sy... 30 9.7
AF063613-1|AAD28543.1| 1087|Homo sapiens 2'-5'oligoadenylate syn... 30 9.7
AB044545-1|BAB18647.1| 1087|Homo sapiens 2'-5' oligoadenylate sy... 30 9.7
>BC114430-1|AAI14431.1| 1203|Homo sapiens SPOCD1 protein protein.
Length = 1203
Score = 31.9 bits (69), Expect = 2.4
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Frame = +1
Query: 136 TPQTKKEEKKNKPTIELPDEVPDDLRQQLLSSGILDN-----ADISVLDYDKVGDTPLDS 300
+P KEE +P PD VP +R++ G D LD GD L
Sbjct: 181 SPTLSKEEPPGRPLTSSPDPVPVRVRKKWRRQGAHSECEEGAGDFLWLDQSPRGDNLLSV 240
Query: 301 LPPDQLANFFSAGG 342
P Q+A+ S GG
Sbjct: 241 GDPPQVADLESLGG 254
>AK131447-1|BAD18592.1| 1216|Homo sapiens protein ( Homo sapiens
cDNA FLJ16587 fis, clone TESTI4000214, weakly similar
to Human transcription factor TFIIS. ).
Length = 1216
Score = 31.9 bits (69), Expect = 2.4
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Frame = +1
Query: 136 TPQTKKEEKKNKPTIELPDEVPDDLRQQLLSSGILDN-----ADISVLDYDKVGDTPLDS 300
+P KEE +P PD VP +R++ G D LD GD L
Sbjct: 181 SPTLSKEEPPGRPLTSSPDPVPVRVRKKWRRQGAHSECEEGAGDFLWLDQSPRGDNLLSV 240
Query: 301 LPPDQLANFFSAGG 342
P Q+A+ S GG
Sbjct: 241 GDPPQVADLESLGG 254
>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
Length = 6995
Score = 31.5 bits (68), Expect = 3.2
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 3/112 (2%)
Frame = +1
Query: 73 SVEIGPTTPKYVSS---TANSVSSTPQTKKEEKKNKPTIELPDEVPDDLRQQLLSSGILD 243
S + TTP Y S T S++++P E + PTI + +VPD + Q+ SSG
Sbjct: 3064 STTVPRTTPNYSHSEPDTTPSIATSPGA--EATSDFPTITVSPDVPDMVTSQVTSSG--- 3118
Query: 244 NADISVLDYDKVGDTPLDSLPPDQLANFFSAGGAQQISSSENRPIVVKPDGS 399
D S+ + L S P+ +F + S+ P V PD S
Sbjct: 3119 -TDTSI----TIPTLTLSSGEPETTTSFITYSETHTSSAIPTLP--VSPDAS 3163
>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
marker CA125 protein.
Length = 22152
Score = 31.1 bits (67), Expect = 4.2
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +1
Query: 73 SVEIGPTTPKYVSS---TANSVSSTPQTKKEEKKNKPTIELPDEVPDDLRQQLLSSG 234
S + TTP Y S T S++++P E + PTI + +VPD + Q+ SSG
Sbjct: 11360 STTVPRTTPNYSHSEPDTTPSIATSPGA--EATSDFPTITVSPDVPDMVTSQVTSSG 11414
>BC113746-1|AAI13747.1| 1087|Homo sapiens 2'-5'-oligoadenylate
synthetase 3, 100kDa protein.
Length = 1087
Score = 29.9 bits (64), Expect = 9.7
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 175 TIELPDE-VPDDLRQQLLSSGILDNADISVLD-YDKVGDTPLDSLPPDQLANFFSAGGAQ 348
+++ P++ VP+ L+ QL+S+ + D+S+L +D VG + P Q+ + G Q
Sbjct: 516 SLQFPEQNVPEALQFQLVSTALKSWTDVSLLPAFDAVGQLSSGTKPNPQVYSRLLTSGCQ 575
Query: 349 Q 351
+
Sbjct: 576 E 576
>AF063613-1|AAD28543.1| 1087|Homo sapiens 2'-5'oligoadenylate
synthetase 3 protein.
Length = 1087
Score = 29.9 bits (64), Expect = 9.7
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 175 TIELPDE-VPDDLRQQLLSSGILDNADISVLD-YDKVGDTPLDSLPPDQLANFFSAGGAQ 348
+++ P++ VP+ L+ QL+S+ + D+S+L +D VG + P Q+ + G Q
Sbjct: 516 SLQFPEQNVPEALQFQLVSTALKSWTDVSLLPAFDAVGQLSSGTKPNPQVYSRLLTSGCQ 575
Query: 349 Q 351
+
Sbjct: 576 E 576
>AB044545-1|BAB18647.1| 1087|Homo sapiens 2'-5' oligoadenylate
synthetase 3 protein.
Length = 1087
Score = 29.9 bits (64), Expect = 9.7
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 175 TIELPDE-VPDDLRQQLLSSGILDNADISVLD-YDKVGDTPLDSLPPDQLANFFSAGGAQ 348
+++ P++ VP+ L+ QL+S+ + D+S+L +D VG + P Q+ + G Q
Sbjct: 516 SLQFPEQNVPEALQFQLVSTALKSWTDVSLLPAFDAVGQLSSGTKPNPQVYSRLLTSGCQ 575
Query: 349 Q 351
+
Sbjct: 576 E 576
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,095,427
Number of Sequences: 237096
Number of extensions: 2047520
Number of successful extensions: 5122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5119
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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