Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1274
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 35 0.068
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 35 0.068
Z93394-6|CAB61034.1| 766|Caenorhabditis elegans Hypothetical pr... 32 0.36
Z93394-5|CAB61035.1| 447|Caenorhabditis elegans Hypothetical pr... 32 0.36
AL117203-24|CAB61043.1| 766|Caenorhabditis elegans Hypothetical... 32 0.36
AL117203-23|CAB61044.1| 447|Caenorhabditis elegans Hypothetical... 32 0.36
AF003136-5|AAK21372.1| 203|Caenorhabditis elegans Hypothetical ... 31 1.1
AF000262-6|AAN60524.1| 318|Caenorhabditis elegans Lipid deplete... 31 1.1
AF016685-16|AAG24152.2| 328|Caenorhabditis elegans Serpentine r... 30 1.9
Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical pr... 29 3.4
AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like tran... 29 3.4
Z81115-6|CAD45598.1| 630|Caenorhabditis elegans Hypothetical pr... 29 4.5
U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical pr... 29 4.5
AL032658-6|CAA21747.2| 630|Caenorhabditis elegans Hypothetical ... 29 4.5
AC006679-4|AAK84464.1| 139|Caenorhabditis elegans Hypothetical ... 29 4.5
Z81055-7|CAB02897.2| 445|Caenorhabditis elegans Hypothetical pr... 28 5.9
AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek (dictyo... 28 7.8
AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek (dictyos... 28 7.8
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 34.7 bits (76), Expect = 0.068
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +1
Query: 106 VSSTANSVSSTPQTKKEEKKNKPTIELPDEVPDDLRQQLLSSGILDNADISVLDYDKVGD 285
+ S +NS +S+P + E + + I +PD +P++ S G L++ + S+ V +
Sbjct: 402 IPSASNSTASSPSSASEAECKQIAIRIPDPIPEEAPSSSKSFGALESVN-SLSPAKTVTN 460
Query: 286 TPLDSLPPDQLANFFS---AGGAQQISSSENRPIVVKPDGSHIESR 414
SL D+L S + I+ R + +K G H R
Sbjct: 461 RNSRSLSNDELRTNKSDKLSSSVDPITLDVERRLSMKRSGQHESDR 506
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 34.7 bits (76), Expect = 0.068
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +1
Query: 106 VSSTANSVSSTPQTKKEEKKNKPTIELPDEVPDDLRQQLLSSGILDNADISVLDYDKVGD 285
+ S +NS +S+P + E + + I +PD +P++ S G L++ + S+ V +
Sbjct: 402 IPSASNSTASSPSSASEAECKQIAIRIPDPIPEEAPSSSKSFGALESVN-SLSPAKTVTN 460
Query: 286 TPLDSLPPDQLANFFS---AGGAQQISSSENRPIVVKPDGSHIESR 414
SL D+L S + I+ R + +K G H R
Sbjct: 461 RNSRSLSNDELRTNKSDKLSSSVDPITLDVERRLSMKRSGQHESDR 506
>Z93394-6|CAB61034.1| 766|Caenorhabditis elegans Hypothetical
protein Y48E1C.1b protein.
Length = 766
Score = 32.3 bits (70), Expect = 0.36
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Frame = +1
Query: 109 SSTANSVSSTPQTKKEEKKNKPTIELPDEVPDDLRQQLLSSGILDNADISVLDYDKVGDT 288
SS +STP+T E P P P+DL++ + + + A++S ++ ++ D+
Sbjct: 536 SSRKRISTSTPKTTAERTLKFPDEITPIRQPNDLQEIV----VFNRANLSAIEEEEQQDS 591
Query: 289 PLDSLPP----DQLANFFSAGGAQQISSSENRPIVVKPDGSHIE-SRIDQDMEDDQ--EG 447
D+ D + + + + E+R +V+P IE R+D+ + DD+ E
Sbjct: 592 -FDAFGTTGGNDSSSKTITNTSSLLRQAEEHRSSIVEPTKDRIEKERLDRLVPDDEEFEN 650
Query: 448 AASENVPSYVAPPKQA 495
A+ ++ ++ A P A
Sbjct: 651 ASVDSFDNFNAEPDPA 666
>Z93394-5|CAB61035.1| 447|Caenorhabditis elegans Hypothetical
protein Y48E1C.1a protein.
Length = 447
Score = 32.3 bits (70), Expect = 0.36
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Frame = +1
Query: 109 SSTANSVSSTPQTKKEEKKNKPTIELPDEVPDDLRQQLLSSGILDNADISVLDYDKVGDT 288
SS +STP+T E P P P+DL++ + + + A++S ++ ++ D+
Sbjct: 217 SSRKRISTSTPKTTAERTLKFPDEITPIRQPNDLQEIV----VFNRANLSAIEEEEQQDS 272
Query: 289 PLDSLPP----DQLANFFSAGGAQQISSSENRPIVVKPDGSHIE-SRIDQDMEDDQ--EG 447
D+ D + + + + E+R +V+P IE R+D+ + DD+ E
Sbjct: 273 -FDAFGTTGGNDSSSKTITNTSSLLRQAEEHRSSIVEPTKDRIEKERLDRLVPDDEEFEN 331
Query: 448 AASENVPSYVAPPKQA 495
A+ ++ ++ A P A
Sbjct: 332 ASVDSFDNFNAEPDPA 347
>AL117203-24|CAB61043.1| 766|Caenorhabditis elegans Hypothetical
protein Y48E1C.1b protein.
Length = 766
Score = 32.3 bits (70), Expect = 0.36
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Frame = +1
Query: 109 SSTANSVSSTPQTKKEEKKNKPTIELPDEVPDDLRQQLLSSGILDNADISVLDYDKVGDT 288
SS +STP+T E P P P+DL++ + + + A++S ++ ++ D+
Sbjct: 536 SSRKRISTSTPKTTAERTLKFPDEITPIRQPNDLQEIV----VFNRANLSAIEEEEQQDS 591
Query: 289 PLDSLPP----DQLANFFSAGGAQQISSSENRPIVVKPDGSHIE-SRIDQDMEDDQ--EG 447
D+ D + + + + E+R +V+P IE R+D+ + DD+ E
Sbjct: 592 -FDAFGTTGGNDSSSKTITNTSSLLRQAEEHRSSIVEPTKDRIEKERLDRLVPDDEEFEN 650
Query: 448 AASENVPSYVAPPKQA 495
A+ ++ ++ A P A
Sbjct: 651 ASVDSFDNFNAEPDPA 666
>AL117203-23|CAB61044.1| 447|Caenorhabditis elegans Hypothetical
protein Y48E1C.1a protein.
Length = 447
Score = 32.3 bits (70), Expect = 0.36
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 7/136 (5%)
Frame = +1
Query: 109 SSTANSVSSTPQTKKEEKKNKPTIELPDEVPDDLRQQLLSSGILDNADISVLDYDKVGDT 288
SS +STP+T E P P P+DL++ + + + A++S ++ ++ D+
Sbjct: 217 SSRKRISTSTPKTTAERTLKFPDEITPIRQPNDLQEIV----VFNRANLSAIEEEEQQDS 272
Query: 289 PLDSLPP----DQLANFFSAGGAQQISSSENRPIVVKPDGSHIE-SRIDQDMEDDQ--EG 447
D+ D + + + + E+R +V+P IE R+D+ + DD+ E
Sbjct: 273 -FDAFGTTGGNDSSSKTITNTSSLLRQAEEHRSSIVEPTKDRIEKERLDRLVPDDEEFEN 331
Query: 448 AASENVPSYVAPPKQA 495
A+ ++ ++ A P A
Sbjct: 332 ASVDSFDNFNAEPDPA 347
>AF003136-5|AAK21372.1| 203|Caenorhabditis elegans Hypothetical
protein F28B3.4 protein.
Length = 203
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 187 PDEVPDDLRQQLLSSGI-LDNADISVLDYDKVGDTPLDSLPPDQLANFFSAGGAQQISSS 363
PD +PD++R++L + L DI+ YDK D L + AN A A+Q S+S
Sbjct: 52 PDTLPDEVREKLAELDLELSEGDITKKGYDKKRDALLAPFKSLRAAN---ALHAEQSSAS 108
Query: 364 EN 369
N
Sbjct: 109 PN 110
>AF000262-6|AAN60524.1| 318|Caenorhabditis elegans Lipid depleted
protein 2 protein.
Length = 318
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 340 GAQQISSSENRPIVVKPDGSHIESRIDQDMEDDQEGAASENVPSYVAPPKQAV 498
GA SS N + + + +++ EDD+EG ++ V YVAP +AV
Sbjct: 116 GASNGSSKGNHRVRLDNMDVEGDEEEEEEDEDDEEGKGAKEVKKYVAPRIRAV 168
>AF016685-16|AAG24152.2| 328|Caenorhabditis elegans Serpentine
receptor, class x protein1 protein.
Length = 328
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = -2
Query: 507 FHFNCLFR--RGNVTWYIF*CCPFLVIFHVLVYSGFNMTSI 391
F F +F + + Y+F CC FLV VL YS F + +I
Sbjct: 132 FSFTLVFAVAKSYIVQYVFPCCSFLVDQTVLSYSYFQIENI 172
>Z48783-2|CAC42295.1| 805|Caenorhabditis elegans Hypothetical
protein F33H1.1b protein.
Length = 805
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 112 STANSVSSTPQTKKEEKKNKPTIE-LPDEVPDDLRQQLLSSGILDNADISVLDYDKV 279
ST +S S TP+ K E + KP I+ L +P + L+ G + +A + +LD K+
Sbjct: 96 STRSSSSGTPRKKMEPEDVKPNIKMLKKSLPVSFQCSNLNDGTVGDASV-MLDPTKI 151
>AF226156-1|AAF61564.1| 805|Caenorhabditis elegans RFX-like
transcription factor DAF-19 protein.
Length = 805
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 112 STANSVSSTPQTKKEEKKNKPTIE-LPDEVPDDLRQQLLSSGILDNADISVLDYDKV 279
ST +S S TP+ K E + KP I+ L +P + L+ G + +A + +LD K+
Sbjct: 96 STRSSSSGTPRKKMEPEDVKPNIKMLKKSLPVSFQCSNLNDGTVGDASV-MLDPTKI 151
>Z81115-6|CAD45598.1| 630|Caenorhabditis elegans Hypothetical
protein Y76A2B.6 protein.
Length = 630
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 537 SGVFGSKMDNFHFNCLFRRGNVTWYIF*CCPFLVIFHVLV 418
+G+FG NF N +F+ +V + F P +IF V V
Sbjct: 559 TGLFGKNFSNFEKNPIFKPSSVFFSNFQLFPLKIIFSVSV 598
>U53147-2|AAA96114.2| 935|Caenorhabditis elegans Hypothetical protein
C01B7.1a protein.
Length = 935
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 283 DTPLDSLPPDQLANFFSAGGAQQISSSENRPIVVKPDGSHIESRIDQDMEDDQEGAASE 459
D PL + + ++GG +I E DG E+ D++ME+D +G +S+
Sbjct: 877 DHPLPTRSDIEKLQILASGGDLKIGGIEKYLKEECEDGEPSEAPEDEEMEEDDDGVSSD 935
>AL032658-6|CAA21747.2| 630|Caenorhabditis elegans Hypothetical
protein Y76A2B.6 protein.
Length = 630
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 537 SGVFGSKMDNFHFNCLFRRGNVTWYIF*CCPFLVIFHVLV 418
+G+FG NF N +F+ +V + F P +IF V V
Sbjct: 559 TGLFGKNFSNFEKNPIFKPSSVFFSNFQLFPLKIIFSVSV 598
>AC006679-4|AAK84464.1| 139|Caenorhabditis elegans Hypothetical
protein R13A5.3 protein.
Length = 139
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 250 DISVLDYDK--VGDTPLDSLPPDQLANFFSAGGAQQISSSENR 372
D+ V YDK + DT LD D F+ GG +ISS + R
Sbjct: 38 DVRVKMYDKDVLMDTKLDDKSTDGNGEFYLTGGDSEISSIDPR 80
>Z81055-7|CAB02897.2| 445|Caenorhabditis elegans Hypothetical
protein F01G10.9 protein.
Length = 445
Score = 28.3 bits (60), Expect = 5.9
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Frame = +1
Query: 115 TANSVSSTPQTKKEEKKNKPTIELPDEVPDDLRQQLLSSGILDNADISVLDYDKVGDTPL 294
T V+ T T+KEE KP E+ DE D L +++ +A S D KV +
Sbjct: 104 TTTPVTVT-STQKEETTTKPFDEMNDEEADRLIEEMYLKKKESHATESPEDSLKVPVEVI 162
Query: 295 DS----LPPDQLANFFSAGGAQQISSSENRPIVVKPDGSHIESRI-DQDMEDD 438
+S PP AN SSS + + + + +++I +QD E+D
Sbjct: 163 ESRKPLSPPSSSANVSKQRSYTTSSSSSSNSAIERYNNQ--QNKIGNQDNEED 213
>AF016448-10|ABR92607.1| 849|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform b protein.
Length = 849
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +1
Query: 256 SVLDYDKVGDTPLDSLPPDQLANFFSAGGAQQISSSENRPIVVKPDGSHIESRIDQDMED 435
S++DYD+ D+ D PD + + S G ++ S + P+ + + S +++ D
Sbjct: 736 SLVDYDESDDSDDDPPSPDAVPS-SSTGSPEKEGDSADGKKGDSPEYNDVSSTSNEEKFD 794
Query: 436 DQEGAASENVPSYVAPPKQAVEM 504
+ GA N V VE+
Sbjct: 795 SRNGAPVTNENGGVEAAAPTVEI 817
>AF016448-7|ABR92606.1| 1085|Caenorhabditis elegans Smek
(dictyostelium suppressorof mek null) homolog protein 1,
isoform a protein.
Length = 1085
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +1
Query: 256 SVLDYDKVGDTPLDSLPPDQLANFFSAGGAQQISSSENRPIVVKPDGSHIESRIDQDMED 435
S++DYD+ D+ D PD + + S G ++ S + P+ + + S +++ D
Sbjct: 972 SLVDYDESDDSDDDPPSPDAVPS-SSTGSPEKEGDSADGKKGDSPEYNDVSSTSNEEKFD 1030
Query: 436 DQEGAASENVPSYVAPPKQAVEM 504
+ GA N V VE+
Sbjct: 1031 SRNGAPVTNENGGVEAAAPTVEI 1053
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,948,132
Number of Sequences: 27780
Number of extensions: 321860
Number of successful extensions: 1294
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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