Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1271
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.0  
SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces pomb...    27   1.4  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   1.4  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    24   7.2  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    24   7.2  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    24   9.6  

>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 145 PTTNEKSSTHLRVVYVCSVGIDIIRCMXXXXXXXXXXDNHKKNSRL 8
           P+ + KSS H+ VV  CSV I +   +            H+++ R+
Sbjct: 231 PSKSNKSSNHVGVVVGCSVAIPVGVVLILIGLGIFLWKRHQRSKRI 276


>SPBC25H2.10c |||tRNA acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -3

Query: 231 PPFKPKRINCFTAEIGRAVVPTRADSQEVLPPMRS 127
           PP  P R+  FT E+G+    TR  +Q ++P +R+
Sbjct: 121 PPIDPVRLVEFTCEVGKTKKMTRY-TQRLIPIVRT 154


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 214 TH*LLHGRNRQGGGTYPCGLT 152
           TH  LHG  R+ GG Y  GL+
Sbjct: 844 THKYLHGEIREKGGAYGAGLS 864


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 7/32 (21%), Positives = 21/32 (65%)
 Frame = +3

Query: 33  SLADDQIMLSDIHLIMSIPTLHTYTTRRWVDD 128
           S++  + +++  ++ +++  LHT   R+W++D
Sbjct: 364 SVSSSEPIITKFNIPITLKDLHTLRNRQWLND 395


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 190 NRQGGGTYPCGLTRGPTTNEKSSTHLR 110
           N +G   YPCG+      N+  S+ LR
Sbjct: 172 NEEGKPYYPCGIIANSLFNDSYSSLLR 198


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 145 PTTNEKSSTHLRVVYVCSVGIDI 77
           P  N + S HL V Y C  GI +
Sbjct: 217 PLFNSQGSNHLSVQYSCLGGISL 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,264
Number of Sequences: 5004
Number of extensions: 29601
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)