Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1271
(386 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0666 + 5748821-5749249 28 2.2
04_04_1376 + 33058306-33059763,33059851-33059991,33060594-330606... 28 2.2
01_06_1749 - 39636951-39638102 27 3.9
08_01_0945 + 9376997-9377818,9378065-9378373,9379510-9379800,938... 27 5.2
08_01_0504 + 4371841-4371932,4372715-4372919 27 5.2
05_07_0098 + 27672298-27672561,27672617-27672705,27673111-276731... 27 5.2
02_04_0458 - 23102262-23102377,23102505-23102661,23103094-231041... 27 5.2
07_01_1040 + 9054441-9056006 27 6.9
02_04_0456 - 23089507-23090607,23091561-23091635 27 6.9
01_06_0846 + 32408333-32408484,32408560-32408926,32409021-324093... 27 6.9
04_04_0244 - 23869222-23870322,23871456-23871521 26 9.1
04_03_0988 - 21469811-21469831,21470823-21471047,21471327-214716... 26 9.1
>08_01_0666 + 5748821-5749249
Length = 142
Score = 28.3 bits (60), Expect = 2.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 21 FLWLSLADDQIMLSDIHLIMSIPTLHTYTTRRWVDD 128
FLWLSL +++ + I+ IP + + + WV D
Sbjct: 104 FLWLSLLISYLLILVVKTILVIPFMLKWVSSAWVVD 139
>04_04_1376 +
33058306-33059763,33059851-33059991,33060594-33060644,
33061094-33061171,33061245-33061388,33061871-33062002
Length = 667
Score = 28.3 bits (60), Expect = 2.2
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = -1
Query: 314 AHRHLQRKCATHL*DISSKVSV*LQRLPHPSNRNALTASRQK*AGRWYLPVRTHKR 147
AH++L R+ +L + S++S L+ HP R+ RQ G W +P+ T R
Sbjct: 472 AHQNLHRRNPRNLSEEISRLSGALRGHQHPRLRSGFLLERQG-DGVWGVPLSTRSR 526
>01_06_1749 - 39636951-39638102
Length = 383
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 252 SIVTAATPPFKPKRINCFTAE-IGRA 178
S+ +AA PPF P RI + A GRA
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGRA 190
>08_01_0945 +
9376997-9377818,9378065-9378373,9379510-9379800,
9380060-9380173,9380280-9380981
Length = 745
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 181 GGGTYPCGLTRGPTTNEKSSTHLRVVYVCSV 89
GGG +P L + P NEK + +VC +
Sbjct: 256 GGGYFPMVLIQMPMCNEKEVYETSISHVCQI 286
>08_01_0504 + 4371841-4371932,4372715-4372919
Length = 98
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 228 PFKPKRINCFTAEI-GRAVVPTRADSQEVLPPMRSHLP 118
P + I C TA + G A+ P+R +V+P RS P
Sbjct: 47 PMRRPHIPCVTAAVAGEAITPSRCVVPKVVPLARSGKP 84
>05_07_0098 +
27672298-27672561,27672617-27672705,27673111-27673159,
27673217-27673304,27673891-27674020,27674790-27675366
Length = 398
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 238 RCNYTETLELISQRWVAHLRCRCL 309
RC T L + RW HL+C CL
Sbjct: 301 RCTGTTVLRNKAPRWHEHLQCWCL 324
>02_04_0458 -
23102262-23102377,23102505-23102661,23103094-23104140,
23104357-23104500,23105389-23105457
Length = 510
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 42 DDQIMLSDIHLIMSIPTLHTYTTRRWVDDFSLVV 143
DD +++SD+ IP+ HT RW DD V+
Sbjct: 259 DDLLIMSDVD---EIPSGHTINLLRWCDDIPEVL 289
>07_01_1040 + 9054441-9056006
Length = 521
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 30 LSLADDQIMLSDIHLIMSIPTLHTYTTRRWVDDFSLVVGPLVSPHG 167
L+LA +D+ LH YT RR + DF V L+ +G
Sbjct: 218 LTLASLLSSCADMAAANEATQLHAYTVRRGLQDFLQVGNALIMAYG 263
>02_04_0456 - 23089507-23090607,23091561-23091635
Length = 391
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 42 DDQIMLSDIHLIMSIPTLHTYTTRRWVDD 128
DD +++SD+ IP+ HT RW DD
Sbjct: 213 DDLLIMSDVD---EIPSGHTINLLRWCDD 238
>01_06_0846 +
32408333-32408484,32408560-32408926,32409021-32409301,
32409877-32409931,32410137-32410331,32410417-32410569
Length = 400
Score = 26.6 bits (56), Expect = 6.9
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 157 VRTGRYHRPAYFCREAVNAFRFEGWGSRCNYTETLELISQRWVAHLRCRC 306
+R R+ R + RE A+ + +C++ L + W A LRC+C
Sbjct: 271 IRGRRFFRCPNYDRERKAAYERQCREQQCDW-RVLTMALPPWEARLRCKC 319
>04_04_0244 - 23869222-23870322,23871456-23871521
Length = 388
Score = 26.2 bits (55), Expect = 9.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 42 DDQIMLSDIHLIMSIPTLHTYTTRRWVDD 128
DD +++SD+ IP+ HT RW DD
Sbjct: 210 DDLLIMSDVD---EIPSGHTIDLLRWCDD 235
>04_03_0988 -
21469811-21469831,21470823-21471047,21471327-21471634,
21471864-21472234,21472327-21472430,21473086-21473325
Length = 422
Score = 26.2 bits (55), Expect = 9.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 343 SSPDVKWLLEPIDIYNVNAPPIFEI*VLRSQYSYSGYPTLQTETH 209
++P + L EPI + VNA + L S+Y G+PTL H
Sbjct: 84 AAPVLAGLSEPIIVAKVNADKYRK---LGSKYGVDGFPTLMLFIH 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,566,000
Number of Sequences: 37544
Number of extensions: 207036
Number of successful extensions: 493
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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