Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1271
         (386 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical...    28   4.9  
U01035-1|AAC46467.1|  303|Drosophila melanogaster Bottleneck pro...    27   6.4  
AE014297-4714|AAF57125.1|  303|Drosophila melanogaster CG1480-PA...    27   6.4  

>AJ487856-1|CAD32253.1| 1830|Drosophila melanogaster hypothetical
           protein protein.
          Length = 1830

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 332 C*VVTGAHRHLQRKCATHL*DISSKVSV*LQRLPHPSNRNA 210
           C    G H  L  +   +  + SS  S   Q+LP PS+RNA
Sbjct: 483 CFTCKGRHHTLLHRSPPNSENASSSTSPPTQQLPRPSSRNA 523


>U01035-1|AAC46467.1|  303|Drosophila melanogaster Bottleneck
           protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 246 VTAATPPFKPKRINCFTAEIGRAVVP 169
           VT   PP KPKR++  TA+     VP
Sbjct: 209 VTGQVPPPKPKRLSATTAQFATPHVP 234


>AE014297-4714|AAF57125.1|  303|Drosophila melanogaster CG1480-PA
           protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 246 VTAATPPFKPKRINCFTAEIGRAVVP 169
           VT   PP KPKR++  TA+     VP
Sbjct: 209 VTGQVPPPKPKRLSATTAQFATPHVP 234


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,318,094
Number of Sequences: 53049
Number of extensions: 342433
Number of successful extensions: 643
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1066083345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)