Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1271
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    27   4.6  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    27   4.6  
AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical...    27   4.6  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    26   8.1  

>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -3

Query: 243 TAATPPFKPKRINCFTAEIGRAVVPTRADSQEVLPPMRS 127
           T A PP +P       A    A  PT A  +   PP+RS
Sbjct: 46  TPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTCAPPVRS 84


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -3

Query: 243 TAATPPFKPKRINCFTAEIGRAVVPTRADSQEVLPPMRS 127
           T A PP +P       A    A  PT A  +   PP+RS
Sbjct: 175 TPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTCAPPVRS 213


>AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical
           protein Y73F8A.35 protein.
          Length = 682

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +1

Query: 172 YHRPAYFCREAVNAF 216
           YHRP  FCR  +N F
Sbjct: 630 YHRPYCFCRNQINVF 644


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 66   IHLIMSIPTLHTYTTRRWVDDF 131
            IH   ++ T H Y T  W DDF
Sbjct: 1397 IHWKQTMSTTHYYATDNWKDDF 1418


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,769,106
Number of Sequences: 27780
Number of extensions: 169385
Number of successful extensions: 269
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)