Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1270
         (816 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    31   0.042
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    27   0.69 
DQ013245-1|AAY34441.1|  487|Anopheles gambiae adrenodoxin reduct...    25   2.8  
AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    24   4.9  
Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.             24   6.4  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           24   6.4  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    24   6.4  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 31.1 bits (67), Expect = 0.042
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 247 SGVRGVPPSQGEAPQ*TPPSR*GRYRSCRTDPPRRPSPAGMCRIW 113
           + +R +PPS+   P+   P   GR+ SCR+ P RR S +     W
Sbjct: 245 ASIRKIPPSRRN-PRRRSPRSGGRWPSCRSPPARRRSRSTRPTSW 288


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 27.1 bits (57), Expect = 0.69
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
 Frame = +2

Query: 515 TVYPR-AWQRSGRVRLALTQILLHQPDPSRR*GKEQLD-RCL-CPLERERPVALP 670
           +++PR A    G    ALT  L  QP+P RR  +E LD  C   P +++R V LP
Sbjct: 433 SMHPRKAPGLDGVPNAALTVALRQQPEPFRRVFQECLDMSCFPQPWKKQRLVLLP 487


>DQ013245-1|AAY34441.1|  487|Anopheles gambiae adrenodoxin reductase
           protein.
          Length = 487

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
 Frame = +3

Query: 288 DAVHVPTEVPRVPGRRR---EIQVRGLPETASSPYPP 389
           D  HV   +P +P  R+   E+ V+ L E A +  PP
Sbjct: 251 DFDHVEESIPNLPRPRKRITELMVKSLAEQAPNNVPP 287


>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
           chain protein.
          Length = 1024

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -3

Query: 325 GTRGTSVGTCTASRVASPSREFCPHRSGVRGVPPSQGEAPQ*TPP 191
           G +G       +  +  P  +  P   G RG+P  QGE     PP
Sbjct: 591 GPQGEKGDRGDSGLMGRPGNDGLPGPQGQRGLPGPQGEKGDQGPP 635


>Y17705-1|CAA76825.1|  124|Anopheles gambiae opsin protein.
          Length = 124

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 357 VPEPVFPFSDLEHAELLSARAQHHESLHL 271
           V EP+     L H  +L+A A HH  +HL
Sbjct: 3   VAEPLV-HHHLRHLRVLAAAADHHLLVHL 30


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 444 EELVERHPAPSDPHHDGGAEDT 379
           E  +++HP+    HH+G  + T
Sbjct: 293 ENCIQQHPSSQQQHHNGKEQRT 314


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 17/71 (23%), Positives = 25/71 (35%)
 Frame = -1

Query: 486 DVGASLGSAGIVLHEELVERHPAPSDPHHDGGAEDTD*TLFLGVPEPVFPFSDLEHAELL 307
           D+  S  +AG+      +E H        +GG   T   + +    P  P  DL   E  
Sbjct: 675 DISPSASAAGLTTRSPPIELHELQQQQQQNGGPTAT--IMMISTAGPHHP-HDLLIEENN 731

Query: 306 SARAQHHESLH 274
                HH+  H
Sbjct: 732 MLNMTHHQHQH 742


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 907,136
Number of Sequences: 2352
Number of extensions: 20950
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86487024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)