Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1270
         (816 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   2.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 578 GVFVLERGVRGLNAAMLWDTPSAKI-NCSRSSM 483
           G+ ++   +  L+  MLWD P+ +I N +R+ +
Sbjct: 482 GLRLIGNDIGNLSRGMLWDLPNLQILNLARNKV 514


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 125 HPGWRWAPWRICSTGTVAA 181
           +P W WA ++ CS G V+A
Sbjct: 111 YPDWSWANYKDCS-GIVSA 128


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 125 HPGWRWAPWRICSTGTVAA 181
           +P W WA ++ CS G V+A
Sbjct: 111 YPDWSWANYKDCS-GIVSA 128


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 181 GRYRSCRTDPPRRPSPAGMCRI 116
           GR +   T PP  P+PA   R+
Sbjct: 375 GRSQKSTTGPPPGPTPAQKARM 396


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,428
Number of Sequences: 438
Number of extensions: 5942
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)