Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1268
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical pr...    34   0.13 
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    31   1.2  
Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U96695-1|AAB57697.1|  491|Caenorhabditis elegans deoxyuridinetri...    29   3.6  
Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical pr...    29   4.8  
M13235-1|AAA28129.1|  552|Caenorhabditis elegans protein ( C.ele...    29   4.8  
U41016-5|AAP46274.1|  811|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U41016-4|AAP46275.1|  809|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U41016-3|AAM51497.1|  901|Caenorhabditis elegans Hypothetical pr...    28   6.4  
U41016-2|AAM51496.1|  899|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore...    28   8.4  

>Z49126-2|CAA88939.2|  411|Caenorhabditis elegans Hypothetical
           protein DH11.2 protein.
          Length = 411

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 371 QRSRTLGTLCLHTSCTQVYSCDLRNPFYSLFQ 466
           Q SR+ GT    T C++VY C L +P + L+Q
Sbjct: 49  QVSRSFGTFVHRTLCSKVYYCALHDPVWELYQ 80


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = +3

Query: 87  PPAASVSYSSISTPINGKTIINPSTEVRRPINFYKTVAPAPVHETFSDHNNAGNAYFSSL 266
           PP +S++  SIS+   G +I  PST      +   T  P+    + +      NA  SSL
Sbjct: 200 PPLSSIT--SISSSAAGSSISAPSTSQPSTTSSLITSPPSTSSSSMAPRKTPPNASSSSL 257

Query: 267 HK-QNLDYYNHQNYDTPVYLNTYQ 335
            K Q+ D    Q  D  V  N  Q
Sbjct: 258 IKRQSQDVQEQQRVDFEVARNVSQ 281


>Z81097-1|CAB03175.1|  491|Caenorhabditis elegans Hypothetical
           protein K07A1.2 protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 105 SYSSISTPINGKTIINPSTEVRRPINFYKTVAP 203
           S   +  P NGK  ++   ++  PI +Y  VAP
Sbjct: 57  SAEDVVVPANGKLCVSTGLQIELPIGYYGRVAP 89


>U96695-1|AAB57697.1|  491|Caenorhabditis elegans
           deoxyuridinetriphosphatase protein.
          Length = 491

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 105 SYSSISTPINGKTIINPSTEVRRPINFYKTVAP 203
           S   +  P NGK  ++   ++  PI +Y  VAP
Sbjct: 57  SAEDVVVPANGKLCVSTGLQIELPIGYYGRVAP 89


>Z50806-5|CAB60297.2| 1209|Caenorhabditis elegans Hypothetical
           protein M79.1c protein.
          Length = 1209

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 508 HHFLLKVANLLDYQHIPLILLCRICHQNQVPYILRFLVLNLTIFIHLR*TQQQQVTNLI 684
           H FL + A + D  H  L+ L  +C      YI+   + N  +  +LR T +  +  +I
Sbjct: 335 HEFLAEAAIMKDLHHKNLVRLLGVCTHEAPFYIITEFMCNGNLLEYLRRTDKSLLPPII 393


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
           protein M79.1b protein.
          Length = 1214

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 508 HHFLLKVANLLDYQHIPLILLCRICHQNQVPYILRFLVLNLTIFIHLR*TQQQQVTNLI 684
           H FL + A + D  H  L+ L  +C      YI+   + N  +  +LR T +  +  +I
Sbjct: 340 HEFLAEAAIMKDLHHKNLVRLLGVCTHEAPFYIITEFMCNGNLLEYLRRTDKSLLPPII 398


>Z50806-3|CAA90691.2| 1224|Caenorhabditis elegans Hypothetical
           protein M79.1a protein.
          Length = 1224

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 508 HHFLLKVANLLDYQHIPLILLCRICHQNQVPYILRFLVLNLTIFIHLR*TQQQQVTNLI 684
           H FL + A + D  H  L+ L  +C      YI+   + N  +  +LR T +  +  +I
Sbjct: 350 HEFLAEAAIMKDLHHKNLVRLLGVCTHEAPFYIITEFMCNGNLLEYLRRTDKSLLPPII 408


>M13235-1|AAA28129.1|  552|Caenorhabditis elegans protein (
           C.elegans DNA homologousto the v-abl oncogene. ).
          Length = 552

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 508 HHFLLKVANLLDYQHIPLILLCRICHQNQVPYILRFLVLNLTIFIHLR*TQQQQVTNLI 684
           H FL + A + D  H  L+ L  +C      YI+   + N  +  +LR T +  +  +I
Sbjct: 201 HEFLAEAAIMKDLHHKNLVRLLGVCTHEAPFYIITEFMCNGNLLEYLRRTDKSLLPPII 259


>U41016-5|AAP46274.1|  811|Caenorhabditis elegans Hypothetical
           protein R11G1.6c protein.
          Length = 811

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 327 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVT 437
           T    PI ++PH+N + H P+V S +T    K++  T
Sbjct: 466 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 501


>U41016-4|AAP46275.1|  809|Caenorhabditis elegans Hypothetical
           protein R11G1.6d protein.
          Length = 809

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 327 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVT 437
           T    PI ++PH+N + H P+V S +T    K++  T
Sbjct: 466 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 501


>U41016-3|AAM51497.1|  901|Caenorhabditis elegans Hypothetical
           protein R11G1.6b protein.
          Length = 901

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 327 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVT 437
           T    PI ++PH+N + H P+V S +T    K++  T
Sbjct: 556 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 591


>U41016-2|AAM51496.1|  899|Caenorhabditis elegans Hypothetical
           protein R11G1.6a protein.
          Length = 899

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 327 TYQHEPIGFNPHENINVHGPLVHSVSTLAAHKSIPVT 437
           T    PI ++PH+N + H P+V S +T    K++  T
Sbjct: 556 TTHRRPI-YDPHDNFDGHEPIVPSKTTTVTVKTVSQT 591


>Z73971-8|CAA98250.1|  488|Caenorhabditis elegans Hypothetical
           protein C50H2.2b protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/51 (19%), Positives = 28/51 (54%)
 Frame = +3

Query: 204 APVHETFSDHNNAGNAYFSSLHKQNLDYYNHQNYDTPVYLNTYQHEPIGFN 356
           +P+H   S H+   +++ +++HK N+D  ++ + +  + L+   +  +  N
Sbjct: 8   SPLHIDLSQHHPDNHSHRNNIHKPNMDNLDNSDVENALILDNLDNHHMTSN 58


>AC087079-13|AAK27866.1|  787|Caenorhabditis elegans Nuclear pore
           complex protein protein13, isoform a protein.
          Length = 787

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 622 TPEILGYTALDFDGKYDKGV*EEYADNPED 533
           T EILG   L  DG+ +KG+ +EY D+P +
Sbjct: 552 TDEILG--KLTPDGRREKGLIDEYLDDPSE 579


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,125,549
Number of Sequences: 27780
Number of extensions: 371737
Number of successful extensions: 1136
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)