Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1267
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase |Schizosaccharo...    31   0.23 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    30   0.30 
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    29   0.91 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.8  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    27   2.8  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    27   3.7  
SPAP27G11.07c |||serine/threonine protein kinase |Schizosaccharo...    27   3.7  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.9  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    26   6.4  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   8.5  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    25   8.5  

>SPAC1093.02 |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = +2

Query: 269 PYPSMWGGLRISPFSIQIYHTSPLQSHTSLAYHLSRSPSKY 391
           P P  WGG+RI P  I+ +     + H   ++  +     Y
Sbjct: 184 PVPDFWGGIRIVPLEIEFWQGGKYRLHDRFSFRRNTLDEDY 224


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 738 FFFFFCVPNSSTMSVFQNYPFFLGHPVYNGIW 643
           FFF  C  NS  +S F  YP F+ +  + G W
Sbjct: 324 FFFTLCANNSLYLSRFCYYPSFVPNTPFGGKW 355


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = -1

Query: 355 RSVRLQR*R-MIDLNGKRGYSEPTPHRGIRVNEEVLKNSKYESRRTTHTYALQNLR 191
           R++RL R R  + L GKR  +E +  +  +   ++ +N+K E +R T + A ++L+
Sbjct: 9   RNLRLARPRPFLPLVGKRFVTEKSQSQEEKDTSKITENAKEEVKRDTSSLAKESLK 64


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +1

Query: 220  LYV*IHILSF*GLLHLPLSLYVG--WAQNIPFFHSDLSYVTSAIAHF 354
            +Y+ + I SF  L    LS  V   +  ++PFF   +S++  AI HF
Sbjct: 1970 MYILLSIFSFFSLFWWFLSRVVQARYILSLPFFFFGISFILVAITHF 2016


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 263 IYPYPSMWGGLRISPFSIQ-IYHTSPLQSHTSLA 361
           IY    +W     S  S Q I  TSP QSHTSLA
Sbjct: 191 IYKMSRIWFAKSDSNLSFQKIPFTSPNQSHTSLA 224


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 726 FCVPNSSTMSVFQNYPFFLGHPVYNGIW 643
           F  P S T++ FQN+   LGH +Y G +
Sbjct: 44  FIKPESFTIAGFQNFFRTLGHYIYVGAY 71


>SPAP27G11.07c |||serine/threonine protein kinase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 238

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 429 YLLDSNVSTAS*KYLEGLRER*YAREVCDC 340
           Y +D+N      ++++G   R Y RE+C+C
Sbjct: 90  YFIDANRGQIYMEWIDGPCVRDYIREICEC 119


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 711  SSTMSVFQNYPFFLGHPVYNGIWIGI 634
            S+ +++   +P   G+P++N IW  I
Sbjct: 2065 STILTLSNTHPSIAGNPIFNDIWTSI 2090


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +1

Query: 277 LYVGWAQNIPFFHSDLS---YVTSAIAHF-SRISSFTQPFQVFLACCTDVTVQQ 426
           LY+ W +++ FF ++ S    +   I H+ +++  F+Q  Q+  +      +Q+
Sbjct: 438 LYINWLKSLSFFQTNSSCAEALVKVIPHYHNKLIDFSQVLQLVFSASEKFPIQE 491


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +1

Query: 253 GLLHLPLSLY-VGWAQNIPFFHSDLSYVTSAIAHFSRISSFTQPFQVFLACCTDVTVQQI 429
           G +  P+ ++ + W  N P+ H  +  +  +   F  I+ F Q     + C +  +   I
Sbjct: 392 GCIVFPIGIFWLAWTGNYPWIHWIVPTLAGSFIGFGIITIFQQTINYIIDCYSGCSASAI 451


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +3

Query: 192 LKFCNA*VCVVRLDSYFEFLRTSSFTLIPLCGVGSEYPLFPFRSIIRHLCNRTLLSHII- 368
           + F N  V +  L+SY++ +R S   +   CG  S +     R +   L N  ++  +  
Sbjct: 360 VNFVNRLVTLGGLESYYDIIRKSRRLIFVACGT-SYHSCVAVRPLFEELTNIPVVVELAS 418

Query: 369 -FHAALPSIF 395
            F    PS+F
Sbjct: 419 DFVDRCPSVF 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,643
Number of Sequences: 5004
Number of extensions: 63163
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)