Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1267
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0182 - 11552540-11552606,11552692-11552787,11553458-115535...    31   1.3  
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001     29   2.9  
04_04_0963 - 29743363-29744450,29744729-29745043,29745116-297454...    29   5.1  
04_03_0242 + 13253268-13253317,13254522-13254573,13254654-132547...    28   8.9  
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399     28   8.9  

>10_06_0182 -
           11552540-11552606,11552692-11552787,11553458-11553528,
           11553660-11553764,11554149-11554239,11554331-11554381,
           11554478-11554566,11554667-11554909,11555027-11555190,
           11555883-11555988,11556075-11556242,11557456-11557494,
           11557582-11557713
          Length = 473

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 248 FKDFFIYPYPSMWGGLRISPFSIQIYHTSPLQSHTSLAYHL 370
           + D  + P P  WGG R++P   + +     + H  L Y L
Sbjct: 417 YSDGSVIPKPDYWGGYRLTPKLFEFWQGQQSRLHDRLQYSL 457


>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
          Length = 1472

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/40 (50%), Positives = 21/40 (52%)
 Frame = +3

Query: 234  SYFEFLRTSSFTLIPLCGVGSEYPLFPFRSIIRHLCNRTL 353
            SYFE L   SFTL   CG+GS   L P   I RH    TL
Sbjct: 983  SYFENLE--SFTLANCCGIGS---LPPNTEIFRHCLTLTL 1017


>04_04_0963 -
           29743363-29744450,29744729-29745043,29745116-29745477,
           29745947-29746013,29746111-29746954
          Length = 891

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
 Frame = +3

Query: 288 VGSEYPLFPFRSIIRHLCNRTLLSHIIFHA-------ALPSIFSLLY*RYCP 422
           +G EYP    RS+  H   + +  H I H        ALPSIFS+ + ++ P
Sbjct: 221 LGDEYPDELNRSVYNHSSEKCICMHCIAHIERAAMIYALPSIFSVHFFQFDP 272


>04_03_0242 +
           13253268-13253317,13254522-13254573,13254654-13254730,
           13254804-13254937,13255645-13255815,13255894-13256035,
           13256257-13256443,13256932-13256998,13257846-13257892,
           13258623-13258629,13258716-13258786,13259229-13259339,
           13260404-13260466,13261050-13261187,13261721-13261826,
           13262101-13262147,13262416-13262460,13262538-13262604,
           13262683-13262737,13263008-13263214,13264723-13264810,
           13264940-13265021,13265274-13265320,13265782-13265941,
           13266058-13266224,13266360-13266659,13267144-13267200
          Length = 914

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -3

Query: 425 CWTVTSVQQAKNTWKGCVKDDMREKCAIAEVTYD 324
           CW    V   K  WK C K D     AIAE  Y+
Sbjct: 456 CWRDLLVPIVKEAWKNCKKGD--SSIAIAERIYE 487


>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
          Length = 146

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -1

Query: 346 RLQR*RMIDLNGKRGYSEPTPHRGIRV--NEEV 254
           R +R + +DL+  RGY E   H G+R+   EEV
Sbjct: 74  RSRRGKDLDLDDMRGYGETATHHGLRLAGREEV 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,064,685
Number of Sequences: 37544
Number of extensions: 326381
Number of successful extensions: 672
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)