Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1267
(739 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 29 3.4
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 29 3.4
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 29 3.4
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF068709-13|AAO26012.1| 321|Caenorhabditis elegans Serpentine r... 29 4.5
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 29 4.5
Z81540-5|CAB04405.2| 946|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical p... 28 7.9
>U50308-2|AAG24028.1| 791|Caenorhabditis elegans Hypothetical
protein F07C3.3 protein.
Length = 791
Score = 30.3 bits (65), Expect = 1.5
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -1
Query: 304 GYSE-PTPHRGIRVNEEVLKNSKYESRRTTHTYALQNLRYFVLLTKSFEYRYKNVSNFFL 128
G++E P H V +N KYE+ R LQN FV + + F +RY+N+ +F
Sbjct: 434 GFTENPADHYYRAYYLAVYENWKYEACRDGEQ--LQN--EFVNIWRRFAHRYRNICHFGF 489
Query: 127 KHYNFQTHENHVV 89
THE +V
Sbjct: 490 TFVTTLTHEAGLV 502
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 302 SPFSIQIYHTSPLQSHTSLAYHLSRSPSK 388
SP + ++H PL SH S A S +PSK
Sbjct: 1140 SPHPLPLHHEHPLTSHDSSAASSSTAPSK 1168
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical
protein C06B8.7 protein.
Length = 3118
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 416 VTSVQQAKNTWKGCVKDDMREKCAIAEVTYDRSEWKKG 303
VT+ KNT G +D+RE+ A+ VT D ++ G
Sbjct: 550 VTNCIIEKNTGNGVFANDIRERTALTNVTLDENQGYAG 587
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 302 SPFSIQIYHTSPLQSHTSLAYHLSRSPSK 388
SP + ++H PL SH S A S +PSK
Sbjct: 1140 SPHPLPLHHEHPLTSHDSSAASSSTAPSK 1168
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = -1
Query: 184 VLLTKSFEYRYKNVSNFFLKHYNFQTHENHVVYLKIT 74
V+L+ F YRY +V++F + + HVV++ +T
Sbjct: 103 VVLSTQFIYRYLSVASFHFLRERYFKGKRHVVWISLT 139
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 471 IVLSILH*AYWLTNYLLDSNVSTAS*KYLEGLRE 370
++L + H W + YLL N+++ KY+E L E
Sbjct: 2032 LILRMPHQCMWQSAYLLRQNIASVKEKYMEVLTE 2065
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 471 IVLSILH*AYWLTNYLLDSNVSTAS*KYLEGLRE 370
++L + H W + YLL N+++ KY+E L E
Sbjct: 2049 LILRMPHQCMWQSAYLLRQNIASVKEKYMEVLTE 2082
>AF068709-13|AAO26012.1| 321|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 56 protein.
Length = 321
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +1
Query: 280 YVGWAQNIPFFHSDLSYVTSAIAHFSRISSFTQP 381
++ W++ + FF +++ ++ +A+ + RISS P
Sbjct: 103 FLSWSKYLTFFFNNMQFLLAAVLNVHRISSVLYP 136
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 471 IVLSILH*AYWLTNYLLDSNVSTAS*KYLEGLRE 370
++L + H W + YLL N+++ KY+E L E
Sbjct: 2032 LILRMPHQCMWQSAYLLRQNIASVKEKYMEVLTE 2065
>Z81540-5|CAB04405.2| 946|Caenorhabditis elegans Hypothetical
protein F46B3.5 protein.
Length = 946
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 328 YVTSAIAHFSRISSFTQPFQVFLACCTDVTVQQII 432
Y A+ ++R S+T P+Q L C D ++Q+I
Sbjct: 18 YQVDAVCIWNRTQSWTVPYQSILVECCDKPLKQLI 52
>Z92782-12|CAH60765.1| 328|Caenorhabditis elegans Hypothetical
protein F14F8.13 protein.
Length = 328
Score = 27.9 bits (59), Expect = 7.9
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = -2
Query: 627 NNCKNEYQ*FIGRFKFFINYVMLFILLNQ*SVHLFL*EINVSAIEFFGLSLFIVLSILH 451
NN ++Y FI F FFI + +L +L V LFL I S F + S +H
Sbjct: 91 NNTVSDYFIFIYCFSFFIIFYILHVLQQTFHVILFLLAILNSLKYIFSFLFLNIQSSVH 149
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,142,729
Number of Sequences: 27780
Number of extensions: 339614
Number of successful extensions: 855
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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