Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1266
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomy... 28 1.7
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 28 1.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.9
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 27 3.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.0
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 26 5.0
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 26 5.0
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 26 6.7
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 6.7
>SPBP22H7.09c |mis15||kinetochore protein Mis15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 27.9 bits (59), Expect = 1.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -3
Query: 545 LKGQAAAPGLSLSECRSSALSPLVGPSPLRYESGLML 435
L+GQ GL CR AL P PS L E+GL +
Sbjct: 353 LRGQHILEGLK-DICRQDALDPFTMPSYLTGETGLSI 388
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 27.9 bits (59), Expect = 1.7
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = -3
Query: 488 LSPLVGPSPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSSR*KDSLLPRRDPMHTA 309
++P V S + Y L + S E E+ F SR +++LLPR +P+
Sbjct: 40 VAPDVIQSQIEYLQALQMQQSLSESENYLQPNFFPFQSGPFSKSRRENTLLPRLNPLAPI 99
Query: 308 RRRRPDNIEQNPHVP 264
R+P NP +P
Sbjct: 100 GARQP-----NPSIP 109
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +1
Query: 490 AEDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPKTAIEISEGSTV 639
+E SD S + KKRK + SEE P K + + +E TV
Sbjct: 216 SESGDSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPSQDSNETCTV 265
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.9
Identities = 29/120 (24%), Positives = 46/120 (38%)
Frame = -3
Query: 716 PSTEATCRLTSSPSRTASSDNCGDWCTVLPSEISIAVFGHNIGSSSDVLCVFRFLFTLKG 537
PS+ ++ LTSS T+S + + S +S + SSS + +
Sbjct: 222 PSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSS 281
Query: 536 QAAAPGLSLSECRSSALSPLVGPSPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSS 357
+ ++S SS+ SP S + S + SS S SS F+ S SS
Sbjct: 282 SPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSS-TLSSSSMSSSSSFSSSPTSSS 340
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +1
Query: 571 STSEEEPILCPKTAIEISEGS 633
ST EEE ++ T+++ISEG+
Sbjct: 2 STMEEEKVISKSTSVDISEGT 22
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 551 IKNEKRKAHRKKNQYYVRKRLSKFQKEVQ 637
+ N +++ R NQ +R + +KF+KEV+
Sbjct: 582 LPNPQKRQKRLSNQVELRNQWAKFEKEVE 610
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 553 KKRKTQSTSEEEPILCPKTAIEISEGSTVHQSPQLSDDAVLEGDEVNRQVASV 711
K + Q S E PK A + S ST QLSD ++ G+E + SV
Sbjct: 229 KAFENQKGSAGETKSEPKEADKGSGDSTKSTMHQLSDSEIITGEEEEESIFSV 281
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = -3
Query: 470 PSPLRYESGLMLAASSEEFEDKSDDRSSIFTVSWLPSS 357
PSP++ + ++ + EE D S SS FT+S+ PS+
Sbjct: 513 PSPIKSRNNNQMSFAMEEEADVSQPSSSSFTLSF-PSA 549
>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 555 KTKNAKHIGRRTNIMSENGYRNFRRK 632
+T+N RRT + ENG+RN R+K
Sbjct: 94 RTRNRSQTQRRT--LLENGFRNSRKK 117
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 425 TTLPTSARTRTAMEKAQREGKEQKIGTLTGIAQEQ 529
T+ PT++ +EK E ++Q TL +++EQ
Sbjct: 319 TSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQ 353
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,145,425
Number of Sequences: 5004
Number of extensions: 66367
Number of successful extensions: 252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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