Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1266
         (757 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0491 - 22680011-22680125,22680210-22680307,22680392-226804...    31   0.75 
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045...    31   1.3  
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061...    29   3.0  
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829...    28   7.0  
09_04_0318 - 16620177-16620582,16620686-16620765,16620873-166212...    28   9.2  
04_03_0204 + 12643435-12644001                                         28   9.2  

>01_05_0491 -
           22680011-22680125,22680210-22680307,22680392-22680472,
           22680564-22680677,22680757-22680823,22680947-22681017,
           22681099-22681236,22681324-22681530,22681630-22681773,
           22681856-22682017,22682117-22682173,22682256-22682348,
           22682425-22682542,22682678-22682817,22683031-22683590,
           22683703-22683805
          Length = 755

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -3

Query: 302 RRPDNIEQNPHVPNLRDPCICADTRNILIKTKNSEIYLSVGLNRPIPASFLYKLYV 135
           R  D  E N  +P L DP      + +LIK  + ++  S+G  RPI A  +Y+  +
Sbjct: 333 RGVDIHENNSQLPGLNDPEAEKQQQELLIKCISEDLGFSIG--RPIAAYLIYRCLI 386


>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
            24804956-24805114,24805862-24805929,24806044-24806433,
            24806515-24806563,24806636-24806788,24807416-24807589,
            24808207-24808362,24808705-24808756,24808830-24808988,
            24809058-24809094,24809218-24809252,24809349-24809400,
            24809614-24809663,24810590-24811924,24812688-24812825,
            24812907-24812957,24813081-24814237
          Length = 1625

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +1

Query: 454  YRNGEGPTRGERAEDRHSDRDSPG 525
            YRN E  +RGER+EDR + RDS G
Sbjct: 1367 YRNDE--SRGERSEDRWNTRDSDG 1388


>03_02_0999 -
           13105030-13105434,13105716-13105850,13105933-13106133,
           13106374-13106673,13106764-13106964,13107246-13107410,
           13107484-13107663,13108171-13108212,13108327-13108404
          Length = 568

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/78 (20%), Positives = 33/78 (42%)
 Frame = +1

Query: 466 EGPTRGERAEDRHSDRDSPGAAACPLRVNKKRKTQSTSEEEPILCPKTAIEISEGSTVHQ 645
           +G   GE+ + +   ++S  + A      KK+K  S   EEP +      +  +      
Sbjct: 479 DGDQEGEKKKKKKKSKESEESPAADADGGKKKKKTSKESEEPPVATTEGEKKEKKKKKKS 538

Query: 646 SPQLSDDAVLEGDEVNRQ 699
             Q ++D  +E +E  ++
Sbjct: 539 DSQDAEDVAMETEESGKK 556


>07_01_0985 -
           8297560-8297610,8297728-8297939,8298327-8298449,
           8298763-8298817,8299940-8300077,8300187-8300261,
           8300339-8300398,8301335-8301392,8301948-8302054,
           8302484-8302558,8302643-8302838,8304222-8304301,
           8308887-8309757,8310672-8310679
          Length = 702

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +1

Query: 568 QSTSEEEPILCPK-TAIEISEGSTVHQSPQLSDDAVLEGDEVNRQV 702
           +   EEEP LCP    +E+   S+       S D+  + D+++ Q+
Sbjct: 221 EENEEEEPQLCPNCDPLEVDSDSSYDSDAAASSDSEYDCDDLDDQI 266


>09_04_0318 -
           16620177-16620582,16620686-16620765,16620873-16621213,
           16621298-16621559
          Length = 362

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +1

Query: 481 GERAEDRHSDRDSPGAAACPLRVNKKRKT--QSTSEEEPILCPKTAIEISE 627
           G+R+  R SD D  G+A   LR++K++    + + +E   L PK  + +++
Sbjct: 159 GDRSCSRASDEDDGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAK 209


>04_03_0204 + 12643435-12644001
          Length = 188

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 340 CCLDAILCIPRAGGDRITS 284
           CCL A+LC+PRA    + +
Sbjct: 6   CCLVAVLCLPRASASPVAA 24


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,834,460
Number of Sequences: 37544
Number of extensions: 438986
Number of successful extensions: 1375
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)