Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1266
(757 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical ... 32 0.38
AF039713-10|AAB96721.1| 691|Caenorhabditis elegans Hypothetical... 30 2.0
Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical pr... 29 2.7
AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin syntha... 29 2.7
U28739-11|AAR25657.1| 487|Caenorhabditis elegans Hypothetical p... 28 6.2
U28739-10|AAR25656.1| 683|Caenorhabditis elegans Hypothetical p... 28 6.2
M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein. 28 6.2
Z68319-3|CAA92701.1| 339|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 28 8.2
U97011-2|AAB52325.2| 689|Caenorhabditis elegans Hypothetical pr... 28 8.2
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 28 8.2
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 28 8.2
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 28 8.2
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 28 8.2
>AF077531-1|AAC64610.1| 374|Caenorhabditis elegans Hypothetical
protein F13C5.2 protein.
Length = 374
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 463 GEGPTRGERAEDRHSDRDSPGAAACPLRVNKKRKTQSTSEEE 588
G G RG R R S GA P + +K+K +S SE+E
Sbjct: 68 GGGTGRGGRGRPRGSKNSDGGAGGPPAKRGRKKKAKSESEDE 109
>AF039713-10|AAB96721.1| 691|Caenorhabditis elegans Hypothetical
protein F57B10.4 protein.
Length = 691
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Frame = +2
Query: 383 KSKNDRPIYLRILQTTLPTSARTRTAMEKAQREGKEQKIGTLTGIAQEQQPVL*E*IKNE 562
K + P+ + +L TLP A +EK+ ++ E + ++ ++ Q + E + E
Sbjct: 100 KGNHSLPMEMSVLSITLPYEA----CIEKSAKK-HETMVFSIDEVSSAVQHLENEKVDVE 154
Query: 563 KRKAHRKKNQYYVRKRLSKFQKEVQY-TNRHSYLTTPFWKEMKSI 694
KR++ K + K + K ++E+Q TN S + +++ S+
Sbjct: 155 KRQSSTGKLIFQTEKEIMKLKEEIQVNTNLESNIIQLSLEKLSSV 199
>Z83731-9|CAH10802.1| 1364|Caenorhabditis elegans Hypothetical
protein F16A11.3b protein.
Length = 1364
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 523 GAAACPLRVNKKRKTQSTSEEEPILCPKTAIEISEGSTVHQSPQLSDD-AVLEGDEVNRQ 699
G P+ + +RK STSE P P T S+ S V + + + +L+ DE+N
Sbjct: 711 GTNGSPISTSPRRKANSTSEPSP---PNTGNLKSDDSIVMLNTEEKEKLGILDFDEMNMS 767
Query: 700 VAS 708
++S
Sbjct: 768 ISS 770
>Z83731-8|CAH10801.1| 1490|Caenorhabditis elegans Hypothetical protein
F16A11.3a protein.
Length = 1490
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 523 GAAACPLRVNKKRKTQSTSEEEPILCPKTAIEISEGSTVHQSPQLSDD-AVLEGDEVNRQ 699
G P+ + +RK STSE P P T S+ S V + + + +L+ DE+N
Sbjct: 837 GTNGSPISTSPRRKANSTSEPSP---PNTGNLKSDDSIVMLNTEEKEKLGILDFDEMNMS 893
Query: 700 VAS 708
++S
Sbjct: 894 ISS 896
>Z83731-7|CAH10800.1| 1046|Caenorhabditis elegans Hypothetical protein
F16A11.3c protein.
Length = 1046
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 523 GAAACPLRVNKKRKTQSTSEEEPILCPKTAIEISEGSTVHQSPQLSDD-AVLEGDEVNRQ 699
G P+ + +RK STSE P P T S+ S V + + + +L+ DE+N
Sbjct: 837 GTNGSPISTSPRRKANSTSEPSP---PNTGNLKSDDSIVMLNTEEKEKLGILDFDEMNMS 893
Query: 700 VAS 708
++S
Sbjct: 894 ISS 896
>Z81505-5|CAH10795.1| 1364|Caenorhabditis elegans Hypothetical
protein F16A11.3b protein.
Length = 1364
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 523 GAAACPLRVNKKRKTQSTSEEEPILCPKTAIEISEGSTVHQSPQLSDD-AVLEGDEVNRQ 699
G P+ + +RK STSE P P T S+ S V + + + +L+ DE+N
Sbjct: 711 GTNGSPISTSPRRKANSTSEPSP---PNTGNLKSDDSIVMLNTEEKEKLGILDFDEMNMS 767
Query: 700 VAS 708
++S
Sbjct: 768 ISS 770
>Z81505-4|CAH10794.1| 1490|Caenorhabditis elegans Hypothetical protein
F16A11.3a protein.
Length = 1490
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 523 GAAACPLRVNKKRKTQSTSEEEPILCPKTAIEISEGSTVHQSPQLSDD-AVLEGDEVNRQ 699
G P+ + +RK STSE P P T S+ S V + + + +L+ DE+N
Sbjct: 837 GTNGSPISTSPRRKANSTSEPSP---PNTGNLKSDDSIVMLNTEEKEKLGILDFDEMNMS 893
Query: 700 VAS 708
++S
Sbjct: 894 ISS 896
>Z81505-3|CAH10793.1| 1046|Caenorhabditis elegans Hypothetical protein
F16A11.3c protein.
Length = 1046
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 523 GAAACPLRVNKKRKTQSTSEEEPILCPKTAIEISEGSTVHQSPQLSDD-AVLEGDEVNRQ 699
G P+ + +RK STSE P P T S+ S V + + + +L+ DE+N
Sbjct: 837 GTNGSPISTSPRRKANSTSEPSP---PNTGNLKSDDSIVMLNTEEKEKLGILDFDEMNMS 893
Query: 700 VAS 708
++S
Sbjct: 894 ISS 896
>Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical protein
T25G3.2 protein.
Length = 1322
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 554 KNEKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHSYLTT 667
+ EKR+ + + + + + K QKE+Q NR+ ++T+
Sbjct: 1063 EKEKREEETQTADFPIEENVEKTQKEIQKANRYVWMTS 1100
>AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin synthase 1
protein.
Length = 1322
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 554 KNEKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHSYLTT 667
+ EKR+ + + + + + K QKE+Q NR+ ++T+
Sbjct: 1063 EKEKREEETQTADFPIEENVEKTQKEIQKANRYVWMTS 1100
>U28739-11|AAR25657.1| 487|Caenorhabditis elegans Hypothetical
protein C17G10.6b protein.
Length = 487
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 463 GEGPTRGERAEDRHSDRDSPGAAACPLRVNKKRKTQSTSEEE 588
G+G T G+ D D D GA +KK+K + ++E
Sbjct: 246 GKGKTTGQDKTDEDEDEDDDGAKHGKKSKSKKKKGKKNDDDE 287
>U28739-10|AAR25656.1| 683|Caenorhabditis elegans Hypothetical
protein C17G10.6a protein.
Length = 683
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 463 GEGPTRGERAEDRHSDRDSPGAAACPLRVNKKRKTQSTSEEE 588
G+G T G+ D D D GA +KK+K + ++E
Sbjct: 297 GKGKTTGQDKTDEDEDEDDDGAKHGKKSKSKKKKGKKNDDDE 338
>M25479-1|AAA27993.1| 282|Caenorhabditis elegans collagen protein.
Length = 282
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 469 GPTRGERAEDRHSDRDSPGAAACP 540
GPT G+ D PGAA CP
Sbjct: 168 GPTGGQGGPGEQGDAGRPGAAGCP 191
>Z68319-3|CAA92701.1| 339|Caenorhabditis elegans Hypothetical
protein T23G7.3 protein.
Length = 339
Score = 27.9 bits (59), Expect = 8.2
Identities = 20/67 (29%), Positives = 37/67 (55%)
Frame = +2
Query: 446 RTRTAMEKAQREGKEQKIGTLTGIAQEQQPVL*E*IKNEKRKAHRKKNQYYVRKRLSKFQ 625
+ R + + QR+ KE+ + T+ I + +Q V E I E +A RK+ + +KRL + +
Sbjct: 250 KERKRLRREQRD-KEETLETVETILEVKQEVKEEIIDEEFDEAERKRLK-KEKKRLKRLR 307
Query: 626 KEVQYTN 646
++ Q N
Sbjct: 308 EQQQPEN 314
>Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical
protein T18D3.1 protein.
Length = 523
Score = 27.9 bits (59), Expect = 8.2
Identities = 23/85 (27%), Positives = 38/85 (44%)
Frame = +2
Query: 383 KSKNDRPIYLRILQTTLPTSARTRTAMEKAQREGKEQKIGTLTGIAQEQQPVL*E*IKNE 562
K K+D P T+ +S++ T E+ R+ KE++ +E+ E +
Sbjct: 409 KDKHDIPSTSSAASTSSSSSSKHETKEERKARKEKERERAEKKA-KKEKDGHREEEKPKK 467
Query: 563 KRKAHRKKNQYYVRKRLSKFQKEVQ 637
K K H + + RKR K +KE Q
Sbjct: 468 KDKKHETEEERAERKRKEKKEKERQ 492
>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical
protein ZC373.4 protein.
Length = 1211
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +1
Query: 547 VNKKRKTQSTSEEEPILCPKTAIEISEGSTVHQSPQLSDDAVLEGDEVNRQVASVEGMKT 726
V KK+KT + + E I PK+ IE E V + L+ V + E R + S +T
Sbjct: 625 VKKKKKTTTVTAE--IEKPKSVIESKEEKLVEKPKLLNGTLVSDALEKRRSLGSKRASET 682
Query: 727 E 729
+
Sbjct: 683 Q 683
>U97011-2|AAB52325.2| 689|Caenorhabditis elegans Hypothetical
protein F31F7.2 protein.
Length = 689
Score = 27.9 bits (59), Expect = 8.2
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +2
Query: 560 EKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHS 655
E + RK+N+Y+ + ++ QK++ Y +H+
Sbjct: 314 ESERQLRKQNEYFTSQLHTEMQKQITYGEKHA 345
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 560 EKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHSYLTT 667
EK +RKKN + L+K + + YT R +TT
Sbjct: 753 EKEAMNRKKNHLLSSETLAKLTQPMYYTTREPEVTT 788
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 560 EKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHSYLTT 667
EK +RKKN + L+K + + YT R +TT
Sbjct: 753 EKEAMNRKKNHLLSSETLAKLTQPMYYTTREPEVTT 788
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 560 EKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHSYLTT 667
EK +RKKN + L+K + + YT R +TT
Sbjct: 753 EKEAMNRKKNHLLSSETLAKLTQPMYYTTREPEVTT 788
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 560 EKRKAHRKKNQYYVRKRLSKFQKEVQYTNRHSYLTT 667
EK +RKKN + L+K + + YT R +TT
Sbjct: 753 EKEAMNRKKNHLLSSETLAKLTQPMYYTTREPEVTT 788
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,746
Number of Sequences: 27780
Number of extensions: 383067
Number of successful extensions: 1278
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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