Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1265
         (805 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    28   1.8  
SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein Usp102|Schi...    27   2.4  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    27   4.1  
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   5.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.2  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    26   7.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.5  
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    25   9.5  

>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 341 NACIRRMSLPNHR*PTMRGPIGELSL*VSRAQPVSITKPDPSKSSTSLNLPP 496
           N  + R +  N +    R P G+L L  S + P S   P    S   LN+PP
Sbjct: 218 NPLLNRPTSFNRQTRIRRAPPGKLDL--SNSNPTSPVSPSSMASRRGLNIPP 267


>SPBC4B4.07c |usp102|mud1|U1 snRNP-associated protein
           Usp102|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 249

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +2

Query: 383 PTMRGPIGELSL*VSRAQPVSITKPDPSKSSTSLNLPPD*NRDPLKRSGEKISGFMQ 553
           PT + P+ + ++   R   ++     P+K     N+P + N D L +  E  SGF +
Sbjct: 146 PTHKKPVPKRNVGAERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAFSGFQE 202


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 425 SRAQPVSITKPDPSKSSTSLNLPPD*NRDPLKRSGEKIS 541
           S  +PVS  +P P K  +S N PP   R+  KR    +S
Sbjct: 260 SNVEPVSQPQPSPDKIVSSPN-PPSAKREKKKRRKSSMS 297


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 514 LEKIRRENQWIHAGYLSCLDAKNRSLL 594
           L+K RR+N+   AGY++ L  KN+ LL
Sbjct: 456 LQKRRRKNEHKDAGYVTELYRKNQHLL 482


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 425 SRAQPVSITKPDPSKSSTSLNLPP 496
           S + P++ T P  S SSTS+ +PP
Sbjct: 129 SLSTPITPTVPPTSTSSTSIPIPP 152



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 425 SRAQPVSITKPDPSKSSTSLNLPP 496
           S + P++ T P  S SSTS+ +PP
Sbjct: 186 SLSTPITPTVPPTSTSSTSIPIPP 209



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 425 SRAQPVSITKPDPSKSSTSLNLPP 496
           S + P++ T P  S SSTS+ +PP
Sbjct: 242 SLSTPITPTVPPTSTSSTSIPIPP 265


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 312 YLWRIISAYIFLYLF*SVSFYCTYLMLLIYKKI*RSIHNHIW 187
           Y++  +  Y + YLF S++ +  +   LIY  I R++H H W
Sbjct: 138 YVYDKLDEYGYFYLFFSIALFLLFSDFLIY-WIHRALH-HRW 177


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 437  PVSITKPDPSKSSTSLNLPPD*NRDPLKRSGEKIS 541
            P +  K DPS +STS N  P   + PL+    K+S
Sbjct: 1319 PTAAVK-DPSTTSTSFNTAPIPQQAPLENQFSKMS 1352


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 296 IIRHRYYVQLSHKITNAC 349
           I+R+ YYV LSH +   C
Sbjct: 468 ILRNDYYVYLSHNLLTVC 485


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,196,645
Number of Sequences: 5004
Number of extensions: 62312
Number of successful extensions: 159
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)