Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1265
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0361 + 2838979-2841745,2841897-2842285                           29   5.7  
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422...    28   7.6  
01_01_1197 - 9630506-9630681,9630774-9630805,9630894-9630988,963...    28   10.0 

>01_01_0361 + 2838979-2841745,2841897-2842285
          Length = 1051

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 550 AGYLSCLDAKNRSLLAKRLGGRIPI 624
           A   SC+  KN  L   +LGGRIP+
Sbjct: 142 ANLSSCISMKNLGLAFNQLGGRIPV 166


>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
            4221561-4222094,4222388-4222842,4223073-4223189,
            4223319-4223477
          Length = 2170

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 26   ILYLNTNLAYNNHCVSTSDGLVAAVTL 106
            ILY N +L Y+   +STS+ LVA + L
Sbjct: 1287 ILYTNPDLLYHESSISTSNQLVAVLRL 1313


>01_01_1197 - 9630506-9630681,9630774-9630805,9630894-9630988,
            9631569-9631642,9631732-9631843,9631967-9632030,
            9632210-9632275,9632396-9632526,9632884-9633021,
            9633115-9633227,9633306-9633471,9633588-9633701,
            9633791-9633853,9633953-9634060,9634143-9634259,
            9634343-9634505,9634646-9634743,9634852-9634949,
            9635054-9635190,9635309-9635530,9635625-9635830,
            9636758-9636845,9638085-9638668
          Length = 1054

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -1

Query: 586  IGFLRPNNSNILHESTDFLAGSFQGVAILIRW*IQRSTALARV 458
            IG  RP + +ILH+   F A   Q +   + +  QRST    V
Sbjct: 954  IGTTRPTHYHILHDEIGFSADDLQELVHSLSYVYQRSTTAISV 996


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,862,207
Number of Sequences: 37544
Number of extensions: 378353
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)