Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1264
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.0  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    26   5.0  
SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces pom...    26   6.6  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
 Frame = -3

Query: 494  VLPTCKQGEMSSEITLMGTLVYSIK-----ILNERLIERY------DLSKLFLSYKVEMF 348
            VL   + G++ S + ++G  V  +K     IL E L+  +      DL  +F+ Y    F
Sbjct: 2474 VLVENEVGDIYSYLKILGKGVNELKSSKQVILPENLVNLFNCLASLDLLHIFIKYTTSSF 2533

Query: 347  WITDRFSISETVCLFS 300
            ++TD F     VC  S
Sbjct: 2534 FLTDDFVRFIRVCFHS 2549


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 521 VSVTQIEPCVLPTCKQGEMSSE--ITLMGTLVYSIKILNERLIERYDLSKL 375
           VS+T++EP  +P+  +  + SE    +   L + I + + R   R   +KL
Sbjct: 131 VSITEVEPAFIPSNMEQALFSEEPFVIQDDLSHQINLDDNRKFSRIQKNKL 181


>SPAC3C7.02c |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 446 MGTLVYSIKILNERLIERYDLSKLFL 369
           +G L+Y I  L E +++RYD  ++ L
Sbjct: 103 LGVLLYEIGELEEHMVDRYDQYRVSL 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,402
Number of Sequences: 5004
Number of extensions: 57373
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)