Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1263
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo...    27   1.6  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    27   2.7  
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |...    26   3.6  

>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 464 GADSAPSSRWSRRCPALPRAEEEAVPYRLSIPPKRMTRDPFFL 592
           G ++A     S   P LP++E+E++P + SI  K   +   FL
Sbjct: 24  GVNTAGKENESTSLPRLPKSEDESIP-KQSIKSKNKKKTQHFL 65


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 266 FATNLVFASINELIFPKTNPSTAFLTPNFA 177
           F  N +   I  LI PK N  TA + P+FA
Sbjct: 226 FIVNGIEKLIRMLILPKRNHPTAIIRPSFA 255


>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 76  RSRRQLADDDALQPLQEVGDEQ 141
           RSR QL D D L+PL    DE+
Sbjct: 168 RSRLQLEDLDLLEPLSSSSDEE 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,165,732
Number of Sequences: 5004
Number of extensions: 15117
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)