Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1263
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0727 + 6446283-6449300 29 2.1
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 29 3.7
02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530 29 3.7
12_02_0760 - 22888636-22889407,22889503-22889769,22890001-228903... 28 4.9
12_01_0736 + 6582371-6585370 28 6.5
12_01_0718 + 6339982-6342981 28 6.5
11_06_0557 - 24955837-24956214,24957225-24957395,24957576-249576... 27 8.6
09_01_0180 + 2632507-2634870 27 8.6
06_03_1006 + 26844161-26844198,26844304-26844372,26844526-268445... 27 8.6
01_02_0029 - 10344787-10344828,10345474-10345564,10346234-103462... 27 8.6
>12_01_0727 + 6446283-6449300
Length = 1005
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 329 PPLDGASMPYCLLSSMFCRSRFATNLVFASINELIFPK-TNPSTAFL 192
P L SMPYC LS CRS ++L S+ EL F + + P FL
Sbjct: 231 PNLQVISMPYCSLSGPICRS--LSSLRSLSVIELHFNQLSGPVPEFL 275
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 103 DALQP-LQEVGDEQLREKRKLEGITQAKFGVKNAVLGFVFGKIN 231
D L P L+E+ EQ++EK +LEG Q G N + F+F ++
Sbjct: 190 DLLLPWLKELQQEQMKEK-ELEGRLQGIGGFSNCLFTFLFAGVS 232
>02_04_0463 + 23135732-23136888,23138956-23139333,23139506-23139530
Length = 519
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +2
Query: 473 SAPSSRWSRRCPALPRAEEEAVPYRLSIPPKR 568
S S RWSR P P E P + PPKR
Sbjct: 231 STDSDRWSRAAPLPPHNGERERPRLVLDPPKR 262
>12_02_0760 -
22888636-22889407,22889503-22889769,22890001-22890302,
22890402-22890512,22890990-22891568,22892026-22892087,
22892434-22892754,22893434-22893776
Length = 918
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -3
Query: 389 PSSCSLGPMTCPTTPASEPRPPLDGASM 306
P C G C T P+SE P DGA +
Sbjct: 309 PRRCRTGRRRCRTDPSSESPPAKDGAGI 336
>12_01_0736 + 6582371-6585370
Length = 999
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 329 PPLDGASMPYCLLSSMFCRS 270
P L SMPYC LS CRS
Sbjct: 227 PKLQIISMPYCSLSGPICRS 246
>12_01_0718 + 6339982-6342981
Length = 999
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 329 PPLDGASMPYCLLSSMFCRS 270
P L SMPYC LS CRS
Sbjct: 227 PKLQIISMPYCSLSGPICRS 246
>11_06_0557 -
24955837-24956214,24957225-24957395,24957576-24957635,
24958419-24958623,24958710-24958953,24959103-24959394,
24959734-24960828,24960915-24961409,24961665-24961823,
24961893-24962387
Length = 1197
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 163 EGITQAKFGVKNAVLGFVFGKINSLIDAKTKFVANLDRQNIELN 294
EG+T A + ++ F ++N++I + N DR N+E+N
Sbjct: 845 EGLTNAAGRLNVGIVCFCSNQVNAIITQLGRKYQNHDRVNLEVN 888
>09_01_0180 + 2632507-2634870
Length = 787
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 398 ILGPSSCSLGPMTCPTTPASEPRPPLDGAS 309
IL PSS + G T P S P P GAS
Sbjct: 180 ILSPSSSASGSATSTPEPTSRPSPAALGAS 209
>06_03_1006 +
26844161-26844198,26844304-26844372,26844526-26844591,
26844831-26844902,26844982-26845053,26846179-26846244,
26846409-26846881,26846966-26847324,26847429-26847697,
26847780-26847918,26848323-26848462,26848612-26848768,
26848925-26848978,26849457-26849539,26851085-26851136
Length = 702
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -3
Query: 389 PSSCSLGPMT-CPTTPASEPRPPLDGASMP 303
PS GP T PT P EP PP +S P
Sbjct: 162 PSPSPTGPPTPSPTNPNLEPSPPPPSSSAP 191
>01_02_0029 -
10344787-10344828,10345474-10345564,10346234-10346295,
10346531-10346690,10347641-10347948
Length = 220
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 464 GADSAPSSRWSRRCPALPRAEEEAVPYRLSIPPKR 568
GA+ PS R R+ PALP+ ++ S P +R
Sbjct: 138 GAEVIPSCRRRRQTPALPQFVHKSARIDFSFPARR 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,472,842
Number of Sequences: 37544
Number of extensions: 119155
Number of successful extensions: 652
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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